miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21209 3' -59 NC_004778.3 + 95134 1.08 0.001049
Target:  5'- gUUCCAGCACGCGCCGGCACUUGCUGCu -3'
miRNA:   3'- -AAGGUCGUGCGCGGCCGUGAACGACG- -5'
21209 3' -59 NC_004778.3 + 82470 0.79 0.133226
Target:  5'- -gUCGGCGugaGCGCCGGCGCUUucGCUGCu -3'
miRNA:   3'- aaGGUCGUg--CGCGGCCGUGAA--CGACG- -5'
21209 3' -59 NC_004778.3 + 67790 0.78 0.151709
Target:  5'- -cCCAGCAUGCGCgCGGCguuggcgcgcGCUgGCUGCg -3'
miRNA:   3'- aaGGUCGUGCGCG-GCCG----------UGAaCGACG- -5'
21209 3' -59 NC_004778.3 + 95776 0.75 0.227302
Target:  5'- aUCCgcgcGGCAgCGCGCCGGC-CgcGCUGCg -3'
miRNA:   3'- aAGG----UCGU-GCGCGGCCGuGaaCGACG- -5'
21209 3' -59 NC_004778.3 + 78172 0.75 0.248815
Target:  5'- gUCCAGCAaagacgcaggauuuUGCGCgGGCAUgucgagGCUGCa -3'
miRNA:   3'- aAGGUCGU--------------GCGCGgCCGUGaa----CGACG- -5'
21209 3' -59 NC_004778.3 + 61644 0.74 0.275901
Target:  5'- -gCCAGCGCGCGCCaacgccGCGCgcaUGCUGg -3'
miRNA:   3'- aaGGUCGUGCGCGGc-----CGUGa--ACGACg -5'
21209 3' -59 NC_004778.3 + 34305 0.74 0.282528
Target:  5'- --gCAGCAaGUGCCGGCGCgUGCUGg -3'
miRNA:   3'- aagGUCGUgCGCGGCCGUGaACGACg -5'
21209 3' -59 NC_004778.3 + 33661 0.73 0.29616
Target:  5'- --gCAGCGCG-GCCGGCGC--GCUGCc -3'
miRNA:   3'- aagGUCGUGCgCGGCCGUGaaCGACG- -5'
21209 3' -59 NC_004778.3 + 57948 0.73 0.29616
Target:  5'- ----cGCGCGCGCCuGCGCUgcgcugGCUGCa -3'
miRNA:   3'- aagguCGUGCGCGGcCGUGAa-----CGACG- -5'
21209 3' -59 NC_004778.3 + 118815 0.73 0.317557
Target:  5'- -cCCAGCG-GCGCCGuGUAUUUGUUGUa -3'
miRNA:   3'- aaGGUCGUgCGCGGC-CGUGAACGACG- -5'
21209 3' -59 NC_004778.3 + 51113 0.71 0.397073
Target:  5'- gUCCAGCgaaaACGCaaauucguacacGCCGGCGCgcgGCUGa -3'
miRNA:   3'- aAGGUCG----UGCG------------CGGCCGUGaa-CGACg -5'
21209 3' -59 NC_004778.3 + 110104 0.71 0.432271
Target:  5'- --aCGGCguGCGCGCCGaGCGCUUGg-GCa -3'
miRNA:   3'- aagGUCG--UGCGCGGC-CGUGAACgaCG- -5'
21209 3' -59 NC_004778.3 + 43088 0.71 0.432271
Target:  5'- -aCgAGCGCGCGCggccuuacuacCGGCGgcUGCUGCg -3'
miRNA:   3'- aaGgUCGUGCGCG-----------GCCGUgaACGACG- -5'
21209 3' -59 NC_004778.3 + 95001 0.7 0.441352
Target:  5'- uUUCC-GCGCGCGCCGuGCGCcgacggGCaggUGCg -3'
miRNA:   3'- -AAGGuCGUGCGCGGC-CGUGaa----CG---ACG- -5'
21209 3' -59 NC_004778.3 + 15563 0.7 0.441352
Target:  5'- -cCCGaCGCGC-CCGGCcauuuugaauuuGCUUGCUGCg -3'
miRNA:   3'- aaGGUcGUGCGcGGCCG------------UGAACGACG- -5'
21209 3' -59 NC_004778.3 + 127747 0.7 0.441352
Target:  5'- gUCgGGCAUGCGCCuGCuCgcGCUGCu -3'
miRNA:   3'- aAGgUCGUGCGCGGcCGuGaaCGACG- -5'
21209 3' -59 NC_004778.3 + 127076 0.7 0.469225
Target:  5'- gUCguGCACGC-CCGGCGagUGCUcGCg -3'
miRNA:   3'- aAGguCGUGCGcGGCCGUgaACGA-CG- -5'
21209 3' -59 NC_004778.3 + 76344 0.7 0.488297
Target:  5'- --gCGGCGguugcUGCGgCGGCGgUUGCUGCg -3'
miRNA:   3'- aagGUCGU-----GCGCgGCCGUgAACGACG- -5'
21209 3' -59 NC_004778.3 + 76374 0.7 0.488297
Target:  5'- --gCGGCGguugcUGCGgCGGCGgUUGCUGCg -3'
miRNA:   3'- aagGUCGU-----GCGCgGCCGUgAACGACG- -5'
21209 3' -59 NC_004778.3 + 78308 0.69 0.496999
Target:  5'- cUUCAGcCGCGCGCCGGCG--UGUacgaauuUGCg -3'
miRNA:   3'- aAGGUC-GUGCGCGGCCGUgaACG-------ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.