miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21209 3' -59 NC_004778.3 + 307 0.68 0.557611
Target:  5'- gUCCcaccugAGCGCGUGCUGGCGCaagaauUUGUaGCa -3'
miRNA:   3'- aAGG------UCGUGCGCGGCCGUG------AACGaCG- -5'
21209 3' -59 NC_004778.3 + 2539 0.68 0.571845
Target:  5'- gUCCAGCAUgcgGCGCCGccaGCAguacaacgacauuacCUUGCUGa -3'
miRNA:   3'- aAGGUCGUG---CGCGGC---CGU---------------GAACGACg -5'
21209 3' -59 NC_004778.3 + 7058 0.68 0.597463
Target:  5'- -gCCAGCAacacguccuccuuCGCGUccaaCGGCAacUGCUGCa -3'
miRNA:   3'- aaGGUCGU-------------GCGCG----GCCGUgaACGACG- -5'
21209 3' -59 NC_004778.3 + 7151 0.68 0.598492
Target:  5'- gUCuCGGCgggcgGCGCGCCGaGCACUaGCUcGUu -3'
miRNA:   3'- aAG-GUCG-----UGCGCGGC-CGUGAaCGA-CG- -5'
21209 3' -59 NC_004778.3 + 7357 0.69 0.507727
Target:  5'- gUCCGaauGCGCGUGCCGGUcgaccgcguaccGCUUGUacgccUGCu -3'
miRNA:   3'- aAGGU---CGUGCGCGGCCG------------UGAACG-----ACG- -5'
21209 3' -59 NC_004778.3 + 10667 0.66 0.700313
Target:  5'- -gCCGGC-CGCGCCgcgcccgaagcguGGCACgUGUUGa -3'
miRNA:   3'- aaGGUCGuGCGCGG-------------CCGUGaACGACg -5'
21209 3' -59 NC_004778.3 + 15563 0.7 0.441352
Target:  5'- -cCCGaCGCGC-CCGGCcauuuugaauuuGCUUGCUGCg -3'
miRNA:   3'- aaGGUcGUGCGcGGCCG------------UGAACGACG- -5'
21209 3' -59 NC_004778.3 + 16306 0.68 0.577972
Target:  5'- -gCCGGCAgGCGUCGGCGUgauaaCUGCg -3'
miRNA:   3'- aaGGUCGUgCGCGGCCGUGaac--GACG- -5'
21209 3' -59 NC_004778.3 + 23097 0.66 0.685039
Target:  5'- uUUCCAGCGCGUccauuauuugucuuuGCgcgcaaucaaacCGGgGCUgggGCUGCg -3'
miRNA:   3'- -AAGGUCGUGCG---------------CG------------GCCgUGAa--CGACG- -5'
21209 3' -59 NC_004778.3 + 25587 0.67 0.6057
Target:  5'- -aUCAGUAUGCugGCCGGC-CUgccgacacugacgcUGCUGCu -3'
miRNA:   3'- aaGGUCGUGCG--CGGCCGuGA--------------ACGACG- -5'
21209 3' -59 NC_004778.3 + 25902 0.68 0.547506
Target:  5'- -gCUGGCACGCucgucGCUgGGCGCUUGCagGCu -3'
miRNA:   3'- aaGGUCGUGCG-----CGG-CCGUGAACGa-CG- -5'
21209 3' -59 NC_004778.3 + 29337 0.67 0.62944
Target:  5'- --gCGGCGCGCGCUggGGUGCgccaagcgGCUGUa -3'
miRNA:   3'- aagGUCGUGCGCGG--CCGUGaa------CGACG- -5'
21209 3' -59 NC_004778.3 + 33661 0.73 0.29616
Target:  5'- --gCAGCGCG-GCCGGCGC--GCUGCc -3'
miRNA:   3'- aagGUCGUGCgCGGCCGUGaaCGACG- -5'
21209 3' -59 NC_004778.3 + 34030 0.66 0.701327
Target:  5'- --gUAGCGCGCGUCGcuaagcugcgacGCGCUUGCUu- -3'
miRNA:   3'- aagGUCGUGCGCGGC------------CGUGAACGAcg -5'
21209 3' -59 NC_004778.3 + 34305 0.74 0.282528
Target:  5'- --gCAGCAaGUGCCGGCGCgUGCUGg -3'
miRNA:   3'- aagGUCGUgCGCGGCCGUGaACGACg -5'
21209 3' -59 NC_004778.3 + 34418 0.69 0.517564
Target:  5'- cUCCGGCagcgcgGCGUGCCcGUACU-GCUGUa -3'
miRNA:   3'- aAGGUCG------UGCGCGGcCGUGAaCGACG- -5'
21209 3' -59 NC_004778.3 + 34491 0.67 0.639771
Target:  5'- -aCCAGUuuaACGcCGCCGacucGCGCUaccgcgUGCUGCu -3'
miRNA:   3'- aaGGUCG---UGC-GCGGC----CGUGA------ACGACG- -5'
21209 3' -59 NC_004778.3 + 34600 0.66 0.711431
Target:  5'- gUgCGGCGCGCaacccaCCGGCAC--GUUGCa -3'
miRNA:   3'- aAgGUCGUGCGc-----GGCCGUGaaCGACG- -5'
21209 3' -59 NC_004778.3 + 38875 0.68 0.598492
Target:  5'- -aUCGGCGCuGCGCuCGGCgGCgagcGCUGCc -3'
miRNA:   3'- aaGGUCGUG-CGCG-GCCG-UGaa--CGACG- -5'
21209 3' -59 NC_004778.3 + 40526 0.68 0.588216
Target:  5'- -gCCGGCGCGuCGCauucauuGGCGCgacuuugguaaUGCUGCa -3'
miRNA:   3'- aaGGUCGUGC-GCGg------CCGUGa----------ACGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.