miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21209 3' -59 NC_004778.3 + 121714 0.68 0.577972
Target:  5'- gUCgGGCACGuUGUCGGCGCgccguaGCUGg -3'
miRNA:   3'- aAGgUCGUGC-GCGGCCGUGaa----CGACg -5'
21209 3' -59 NC_004778.3 + 77389 0.69 0.517564
Target:  5'- ----cGCACGCGCCGGCcgcgucGCUUGUgauUGUg -3'
miRNA:   3'- aagguCGUGCGCGGCCG------UGAACG---ACG- -5'
21209 3' -59 NC_004778.3 + 114361 0.69 0.517564
Target:  5'- -cCCuGCGCGCcgcgggcgagGCCGGCcCUUGCguaGCa -3'
miRNA:   3'- aaGGuCGUGCG----------CGGCCGuGAACGa--CG- -5'
21209 3' -59 NC_004778.3 + 105637 0.69 0.527476
Target:  5'- cUUUAGCGCGUGCUugguggGGUACUUGgUGUa -3'
miRNA:   3'- aAGGUCGUGCGCGG------CCGUGAACgACG- -5'
21209 3' -59 NC_004778.3 + 25902 0.68 0.547506
Target:  5'- -gCUGGCACGCucgucGCUgGGCGCUUGCagGCu -3'
miRNA:   3'- aaGGUCGUGCG-----CGG-CCGUGAACGa-CG- -5'
21209 3' -59 NC_004778.3 + 124562 0.68 0.547506
Target:  5'- --aCAGCGCGCGCCGaGuCACguagGC-GCg -3'
miRNA:   3'- aagGUCGUGCGCGGC-C-GUGaa--CGaCG- -5'
21209 3' -59 NC_004778.3 + 307 0.68 0.557611
Target:  5'- gUCCcaccugAGCGCGUGCUGGCGCaagaauUUGUaGCa -3'
miRNA:   3'- aAGG------UCGUGCGCGGCCGUG------AACGaCG- -5'
21209 3' -59 NC_004778.3 + 55929 0.68 0.577972
Target:  5'- -gCCAGCACuuuuaaGuuGGCaaagcauuccACUUGCUGCa -3'
miRNA:   3'- aaGGUCGUGcg----CggCCG----------UGAACGACG- -5'
21209 3' -59 NC_004778.3 + 16306 0.68 0.577972
Target:  5'- -gCCGGCAgGCGUCGGCGUgauaaCUGCg -3'
miRNA:   3'- aaGGUCGUgCGCGGCCGUGaac--GACG- -5'
21209 3' -59 NC_004778.3 + 34418 0.69 0.517564
Target:  5'- cUCCGGCagcgcgGCGUGCCcGUACU-GCUGUa -3'
miRNA:   3'- aAGGUCG------UGCGCGGcCGUGAaCGACG- -5'
21209 3' -59 NC_004778.3 + 7357 0.69 0.507727
Target:  5'- gUCCGaauGCGCGUGCCGGUcgaccgcguaccGCUUGUacgccUGCu -3'
miRNA:   3'- aAGGU---CGUGCGCGGCCG------------UGAACG-----ACG- -5'
21209 3' -59 NC_004778.3 + 127076 0.7 0.469225
Target:  5'- gUCguGCACGC-CCGGCGagUGCUcGCg -3'
miRNA:   3'- aAGguCGUGCGcGGCCGUgaACGA-CG- -5'
21209 3' -59 NC_004778.3 + 61644 0.74 0.275901
Target:  5'- -gCCAGCGCGCGCCaacgccGCGCgcaUGCUGg -3'
miRNA:   3'- aaGGUCGUGCGCGGc-----CGUGa--ACGACg -5'
21209 3' -59 NC_004778.3 + 34305 0.74 0.282528
Target:  5'- --gCAGCAaGUGCCGGCGCgUGCUGg -3'
miRNA:   3'- aagGUCGUgCGCGGCCGUGaACGACg -5'
21209 3' -59 NC_004778.3 + 57948 0.73 0.29616
Target:  5'- ----cGCGCGCGCCuGCGCUgcgcugGCUGCa -3'
miRNA:   3'- aagguCGUGCGCGGcCGUGAa-----CGACG- -5'
21209 3' -59 NC_004778.3 + 118815 0.73 0.317557
Target:  5'- -cCCAGCG-GCGCCGuGUAUUUGUUGUa -3'
miRNA:   3'- aaGGUCGUgCGCGGC-CGUGAACGACG- -5'
21209 3' -59 NC_004778.3 + 51113 0.71 0.397073
Target:  5'- gUCCAGCgaaaACGCaaauucguacacGCCGGCGCgcgGCUGa -3'
miRNA:   3'- aAGGUCG----UGCG------------CGGCCGUGaa-CGACg -5'
21209 3' -59 NC_004778.3 + 43088 0.71 0.432271
Target:  5'- -aCgAGCGCGCGCggccuuacuacCGGCGgcUGCUGCg -3'
miRNA:   3'- aaGgUCGUGCGCG-----------GCCGUgaACGACG- -5'
21209 3' -59 NC_004778.3 + 110104 0.71 0.432271
Target:  5'- --aCGGCguGCGCGCCGaGCGCUUGg-GCa -3'
miRNA:   3'- aagGUCG--UGCGCGGC-CGUGAACgaCG- -5'
21209 3' -59 NC_004778.3 + 95001 0.7 0.441352
Target:  5'- uUUCC-GCGCGCGCCGuGCGCcgacggGCaggUGCg -3'
miRNA:   3'- -AAGGuCGUGCGCGGC-CGUGaa----CG---ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.