miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21212 5' -56.2 NC_004778.3 + 90931 1.1 0.001749
Target:  5'- uUGCAAGGCAUGGACGCCGAACGCGUCg -3'
miRNA:   3'- -ACGUUCCGUACCUGCGGCUUGCGCAG- -5'
21212 5' -56.2 NC_004778.3 + 71639 0.78 0.252235
Target:  5'- aGCAAGGCGuUGGugGCCGAuauGCaGCuGUCg -3'
miRNA:   3'- aCGUUCCGU-ACCugCGGCU---UG-CG-CAG- -5'
21212 5' -56.2 NC_004778.3 + 30390 0.76 0.334977
Target:  5'- uUGCAcguggaaauuguGGGCGUGaGCGCCGcGACGCGUUg -3'
miRNA:   3'- -ACGU------------UCCGUACcUGCGGC-UUGCGCAG- -5'
21212 5' -56.2 NC_004778.3 + 44167 0.75 0.358538
Target:  5'- gGCGAcGGCAUGGACGC-GGGCGCcGUg -3'
miRNA:   3'- aCGUU-CCGUACCUGCGgCUUGCG-CAg -5'
21212 5' -56.2 NC_004778.3 + 13985 0.75 0.391714
Target:  5'- aGCGAGGUAUgugaGGAC-CCGGGCGCGgUCu -3'
miRNA:   3'- aCGUUCCGUA----CCUGcGGCUUGCGC-AG- -5'
21212 5' -56.2 NC_004778.3 + 62340 0.73 0.492488
Target:  5'- cGCGAGGCugagcugcuUGGccgcuuCGuuGAGCGCGUCc -3'
miRNA:   3'- aCGUUCCGu--------ACCu-----GCggCUUGCGCAG- -5'
21212 5' -56.2 NC_004778.3 + 83220 0.72 0.522031
Target:  5'- aGCAAGGCGugaUGGuGCGCCGcGACGaaaaaaGUCg -3'
miRNA:   3'- aCGUUCCGU---ACC-UGCGGC-UUGCg-----CAG- -5'
21212 5' -56.2 NC_004778.3 + 83732 0.72 0.532032
Target:  5'- aGCuuAGGCGcGGugGCCcccguGGACGCGUUa -3'
miRNA:   3'- aCGu-UCCGUaCCugCGG-----CUUGCGCAG- -5'
21212 5' -56.2 NC_004778.3 + 44137 0.72 0.542102
Target:  5'- gGCGAcGGCAUGGACGCgGGcguuUGCGg- -3'
miRNA:   3'- aCGUU-CCGUACCUGCGgCUu---GCGCag -5'
21212 5' -56.2 NC_004778.3 + 88561 0.71 0.572661
Target:  5'- uUGUAcGGCAaugUGGACGCCGAAaagcacauuaacCGCGcCa -3'
miRNA:   3'- -ACGUuCCGU---ACCUGCGGCUU------------GCGCaG- -5'
21212 5' -56.2 NC_004778.3 + 20343 0.7 0.64514
Target:  5'- cGCAcGGGUcgAUGGACacuguGCUGcAACGCGUCg -3'
miRNA:   3'- aCGU-UCCG--UACCUG-----CGGC-UUGCGCAG- -5'
21212 5' -56.2 NC_004778.3 + 36555 0.7 0.655517
Target:  5'- cGCugcGGCucaagcUGGACGCCGAGC-CGUUc -3'
miRNA:   3'- aCGuu-CCGu-----ACCUGCGGCUUGcGCAG- -5'
21212 5' -56.2 NC_004778.3 + 16673 0.7 0.665875
Target:  5'- cUGguGGGgAUGGGCGCUGugaGCGUg -3'
miRNA:   3'- -ACguUCCgUACCUGCGGCuugCGCAg -5'
21212 5' -56.2 NC_004778.3 + 40511 0.7 0.665875
Target:  5'- uUGCGGcGCuucGACGCCG-GCGCGUCg -3'
miRNA:   3'- -ACGUUcCGuacCUGCGGCuUGCGCAG- -5'
21212 5' -56.2 NC_004778.3 + 71187 0.69 0.676204
Target:  5'- gGCAAGG-GUGu-CGCCGAAgGCGUUg -3'
miRNA:   3'- aCGUUCCgUACcuGCGGCUUgCGCAG- -5'
21212 5' -56.2 NC_004778.3 + 95243 0.69 0.69572
Target:  5'- cGCGgacucGGGCAUGGuGCGCCGcGGCGaccgcacCGUCg -3'
miRNA:   3'- aCGU-----UCCGUACC-UGCGGC-UUGC-------GCAG- -5'
21212 5' -56.2 NC_004778.3 + 54630 0.69 0.696743
Target:  5'- cGCAAGGCgGUGuacuUGCCGGGCGUGcCg -3'
miRNA:   3'- aCGUUCCG-UACcu--GCGGCUUGCGCaG- -5'
21212 5' -56.2 NC_004778.3 + 113984 0.69 0.706933
Target:  5'- aGCAcuuuGGCGUGGuCGCgCGGAgGCGg- -3'
miRNA:   3'- aCGUu---CCGUACCuGCG-GCUUgCGCag -5'
21212 5' -56.2 NC_004778.3 + 30841 0.69 0.717058
Target:  5'- gUGguAGGCAU-GACGCUGAGCGaauUCg -3'
miRNA:   3'- -ACguUCCGUAcCUGCGGCUUGCgc-AG- -5'
21212 5' -56.2 NC_004778.3 + 14396 0.69 0.717058
Target:  5'- gGC-AGGCGuUGGGggaGCgCGGACGCGUUa -3'
miRNA:   3'- aCGuUCCGU-ACCUg--CG-GCUUGCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.