miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21212 5' -56.2 NC_004778.3 + 7039 0.66 0.854639
Target:  5'- aGCGAGGUc--GGCGCUGAcgcACGCGa- -3'
miRNA:   3'- aCGUUCCGuacCUGCGGCU---UGCGCag -5'
21212 5' -56.2 NC_004778.3 + 13985 0.75 0.391714
Target:  5'- aGCGAGGUAUgugaGGAC-CCGGGCGCGgUCu -3'
miRNA:   3'- aCGUUCCGUA----CCUGcGGCUUGCGC-AG- -5'
21212 5' -56.2 NC_004778.3 + 14396 0.69 0.717058
Target:  5'- gGC-AGGCGuUGGGggaGCgCGGACGCGUUa -3'
miRNA:   3'- aCGuUCCGU-ACCUg--CG-GCUUGCGCAG- -5'
21212 5' -56.2 NC_004778.3 + 14573 0.67 0.812607
Target:  5'- aGCAuuguggacGGCcUGGACGCC-AACacgGCGUCa -3'
miRNA:   3'- aCGUu-------CCGuACCUGCGGcUUG---CGCAG- -5'
21212 5' -56.2 NC_004778.3 + 16673 0.7 0.665875
Target:  5'- cUGguGGGgAUGGGCGCUGugaGCGUg -3'
miRNA:   3'- -ACguUCCgUACCUGCGGCuugCGCAg -5'
21212 5' -56.2 NC_004778.3 + 20343 0.7 0.64514
Target:  5'- cGCAcGGGUcgAUGGACacuguGCUGcAACGCGUCg -3'
miRNA:   3'- aCGU-UCCG--UACCUG-----CGGC-UUGCGCAG- -5'
21212 5' -56.2 NC_004778.3 + 26527 0.66 0.860131
Target:  5'- --aAAGGCAaguUGGGCGCCGGcaaguauuucgcuaGCGUGg- -3'
miRNA:   3'- acgUUCCGU---ACCUGCGGCU--------------UGCGCag -5'
21212 5' -56.2 NC_004778.3 + 29166 0.67 0.794555
Target:  5'- cGCGAGcGCGU-GACGCUGccACGgGUCg -3'
miRNA:   3'- aCGUUC-CGUAcCUGCGGCu-UGCgCAG- -5'
21212 5' -56.2 NC_004778.3 + 30390 0.76 0.334977
Target:  5'- uUGCAcguggaaauuguGGGCGUGaGCGCCGcGACGCGUUg -3'
miRNA:   3'- -ACGU------------UCCGUACcUGCGGC-UUGCGCAG- -5'
21212 5' -56.2 NC_004778.3 + 30841 0.69 0.717058
Target:  5'- gUGguAGGCAU-GACGCUGAGCGaauUCg -3'
miRNA:   3'- -ACguUCCGUAcCUGCGGCUUGCgc-AG- -5'
21212 5' -56.2 NC_004778.3 + 31079 0.67 0.803661
Target:  5'- uUGCugcGCccGGGCGCgGuGCGCGUCu -3'
miRNA:   3'- -ACGuucCGuaCCUGCGgCuUGCGCAG- -5'
21212 5' -56.2 NC_004778.3 + 34334 0.68 0.746946
Target:  5'- gUGCAGGGCGugcucgacaccaUGGACGacaaGGugGUGUUg -3'
miRNA:   3'- -ACGUUCCGU------------ACCUGCgg--CUugCGCAG- -5'
21212 5' -56.2 NC_004778.3 + 34918 0.66 0.838398
Target:  5'- cGCAAGcGCAUGGcauuguGCGCgGcg-GCGUCg -3'
miRNA:   3'- aCGUUC-CGUACC------UGCGgCuugCGCAG- -5'
21212 5' -56.2 NC_004778.3 + 36018 0.66 0.870051
Target:  5'- gGCGGGcaacgccauccGCAUGGGCguGCCGuACGUGUa -3'
miRNA:   3'- aCGUUC-----------CGUACCUG--CGGCuUGCGCAg -5'
21212 5' -56.2 NC_004778.3 + 36320 0.68 0.737074
Target:  5'- cGgAGGGCGUGGuCGuaCCGGGCGUcauGUCg -3'
miRNA:   3'- aCgUUCCGUACCuGC--GGCUUGCG---CAG- -5'
21212 5' -56.2 NC_004778.3 + 36555 0.7 0.655517
Target:  5'- cGCugcGGCucaagcUGGACGCCGAGC-CGUUc -3'
miRNA:   3'- aCGuu-CCGu-----ACCUGCGGCUUGcGCAG- -5'
21212 5' -56.2 NC_004778.3 + 38757 0.66 0.870051
Target:  5'- cGCu-GGC-UGGgcACGCCGAGaaguacgcaGCGUCg -3'
miRNA:   3'- aCGuuCCGuACC--UGCGGCUUg--------CGCAG- -5'
21212 5' -56.2 NC_004778.3 + 38942 0.68 0.766368
Target:  5'- gUGCGGaucGGCGUGGuCGCCGccGCGCa-- -3'
miRNA:   3'- -ACGUU---CCGUACCuGCGGCu-UGCGcag -5'
21212 5' -56.2 NC_004778.3 + 40511 0.7 0.665875
Target:  5'- uUGCGGcGCuucGACGCCG-GCGCGUCg -3'
miRNA:   3'- -ACGUUcCGuacCUGCGGCuUGCGCAG- -5'
21212 5' -56.2 NC_004778.3 + 43123 0.66 0.862452
Target:  5'- cGCAAGcGCuucgacGGCGCCGcGGCGCGcCg -3'
miRNA:   3'- aCGUUC-CGuac---CUGCGGC-UUGCGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.