miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21212 5' -56.2 NC_004778.3 + 77381 0.67 0.812607
Target:  5'- gUGCAAuGCGcacGCGCCGGcCGCGUCg -3'
miRNA:   3'- -ACGUUcCGUaccUGCGGCUuGCGCAG- -5'
21212 5' -56.2 NC_004778.3 + 34334 0.68 0.746946
Target:  5'- gUGCAGGGCGugcucgacaccaUGGACGacaaGGugGUGUUg -3'
miRNA:   3'- -ACGUUCCGU------------ACCUGCgg--CUugCGCAG- -5'
21212 5' -56.2 NC_004778.3 + 127795 0.68 0.756714
Target:  5'- aGCAgAGGCGucgcggcauuuUGuGACGCUGAcgcgcAUGCGUCa -3'
miRNA:   3'- aCGU-UCCGU-----------AC-CUGCGGCU-----UGCGCAG- -5'
21212 5' -56.2 NC_004778.3 + 38942 0.68 0.766368
Target:  5'- gUGCGGaucGGCGUGGuCGCCGccGCGCa-- -3'
miRNA:   3'- -ACGUU---CCGUACCuGCGGCu-UGCGcag -5'
21212 5' -56.2 NC_004778.3 + 61346 0.68 0.774952
Target:  5'- cGCAGGuucggcuucauguGCGgacGGCGCCG-GCGCGUCg -3'
miRNA:   3'- aCGUUC-------------CGUac-CUGCGGCuUGCGCAG- -5'
21212 5' -56.2 NC_004778.3 + 121349 0.67 0.785298
Target:  5'- aGCGGGuCAUGGuuacaaauaaccACGUCGGACGUGUUc -3'
miRNA:   3'- aCGUUCcGUACC------------UGCGGCUUGCGCAG- -5'
21212 5' -56.2 NC_004778.3 + 29166 0.67 0.794555
Target:  5'- cGCGAGcGCGU-GACGCUGccACGgGUCg -3'
miRNA:   3'- aCGUUC-CGUAcCUGCGGCu-UGCgCAG- -5'
21212 5' -56.2 NC_004778.3 + 99367 0.67 0.803661
Target:  5'- aGCGAGGUc--GGCGCCG-ACGCacGUCu -3'
miRNA:   3'- aCGUUCCGuacCUGCGGCuUGCG--CAG- -5'
21212 5' -56.2 NC_004778.3 + 14573 0.67 0.812607
Target:  5'- aGCAuuguggacGGCcUGGACGCC-AACacgGCGUCa -3'
miRNA:   3'- aCGUu-------CCGuACCUGCGGcUUG---CGCAG- -5'
21212 5' -56.2 NC_004778.3 + 76654 0.68 0.737074
Target:  5'- cGCucGGUAauUGG-CGCCGAAacCGCGUUg -3'
miRNA:   3'- aCGuuCCGU--ACCuGCGGCUU--GCGCAG- -5'
21212 5' -56.2 NC_004778.3 + 36320 0.68 0.737074
Target:  5'- cGgAGGGCGUGGuCGuaCCGGGCGUcauGUCg -3'
miRNA:   3'- aCgUUCCGUACCuGC--GGCUUGCG---CAG- -5'
21212 5' -56.2 NC_004778.3 + 110105 0.69 0.727108
Target:  5'- ----cGGCGUGcGCGCCGAGCGCu-- -3'
miRNA:   3'- acguuCCGUACcUGCGGCUUGCGcag -5'
21212 5' -56.2 NC_004778.3 + 62340 0.73 0.492488
Target:  5'- cGCGAGGCugagcugcuUGGccgcuuCGuuGAGCGCGUCc -3'
miRNA:   3'- aCGUUCCGu--------ACCu-----GCggCUUGCGCAG- -5'
21212 5' -56.2 NC_004778.3 + 83732 0.72 0.532032
Target:  5'- aGCuuAGGCGcGGugGCCcccguGGACGCGUUa -3'
miRNA:   3'- aCGu-UCCGUaCCugCGG-----CUUGCGCAG- -5'
21212 5' -56.2 NC_004778.3 + 20343 0.7 0.64514
Target:  5'- cGCAcGGGUcgAUGGACacuguGCUGcAACGCGUCg -3'
miRNA:   3'- aCGU-UCCG--UACCUG-----CGGC-UUGCGCAG- -5'
21212 5' -56.2 NC_004778.3 + 16673 0.7 0.665875
Target:  5'- cUGguGGGgAUGGGCGCUGugaGCGUg -3'
miRNA:   3'- -ACguUCCgUACCUGCGGCuugCGCAg -5'
21212 5' -56.2 NC_004778.3 + 40511 0.7 0.665875
Target:  5'- uUGCGGcGCuucGACGCCG-GCGCGUCg -3'
miRNA:   3'- -ACGUUcCGuacCUGCGGCuUGCGCAG- -5'
21212 5' -56.2 NC_004778.3 + 71187 0.69 0.676204
Target:  5'- gGCAAGG-GUGu-CGCCGAAgGCGUUg -3'
miRNA:   3'- aCGUUCCgUACcuGCGGCUUgCGCAG- -5'
21212 5' -56.2 NC_004778.3 + 95243 0.69 0.69572
Target:  5'- cGCGgacucGGGCAUGGuGCGCCGcGGCGaccgcacCGUCg -3'
miRNA:   3'- aCGU-----UCCGUACC-UGCGGC-UUGC-------GCAG- -5'
21212 5' -56.2 NC_004778.3 + 30841 0.69 0.717058
Target:  5'- gUGguAGGCAU-GACGCUGAGCGaauUCg -3'
miRNA:   3'- -ACguUCCGUAcCUGCGGCUUGCgc-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.