miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21214 5' -60.1 NC_004778.3 + 86948 1.1 0.000924
Target:  5'- cCGACCACGCCGCCCUCAACCCCCAACg -3'
miRNA:   3'- -GCUGGUGCGGCGGGAGUUGGGGGUUG- -5'
21214 5' -60.1 NC_004778.3 + 58102 0.74 0.273211
Target:  5'- -uGCCGcCGCCGCgCCUCGAgCCCCAc- -3'
miRNA:   3'- gcUGGU-GCGGCG-GGAGUUgGGGGUug -5'
21214 5' -60.1 NC_004778.3 + 18640 0.73 0.320465
Target:  5'- aCGcCgCGCGCCGCCUaCcGCCCCCAAg -3'
miRNA:   3'- -GCuG-GUGCGGCGGGaGuUGGGGGUUg -5'
21214 5' -60.1 NC_004778.3 + 28392 0.71 0.415017
Target:  5'- aCGGCCucaACGaCGCCCUCAaaACCauuCCCGGCa -3'
miRNA:   3'- -GCUGG---UGCgGCGGGAGU--UGG---GGGUUG- -5'
21214 5' -60.1 NC_004778.3 + 4034 0.7 0.440305
Target:  5'- gCGAUCGCGCUGCCuaauagcagagugCUCAgaaGCUCUCAACg -3'
miRNA:   3'- -GCUGGUGCGGCGG-------------GAGU---UGGGGGUUG- -5'
21214 5' -60.1 NC_004778.3 + 15463 0.7 0.458247
Target:  5'- gCGACCACGCCaaagugcugccgcGCaUCUCcACCgCCAACg -3'
miRNA:   3'- -GCUGGUGCGG-------------CG-GGAGuUGGgGGUUG- -5'
21214 5' -60.1 NC_004778.3 + 15547 0.7 0.459154
Target:  5'- -cGCgGCGCCGCCUUCGcccgacGCgCCCGGCc -3'
miRNA:   3'- gcUGgUGCGGCGGGAGU------UGgGGGUUG- -5'
21214 5' -60.1 NC_004778.3 + 57413 0.7 0.477498
Target:  5'- gCGGCUGaugaaGCCGCCCUCGucgcGCCCguCCAAUu -3'
miRNA:   3'- -GCUGGUg----CGGCGGGAGU----UGGG--GGUUG- -5'
21214 5' -60.1 NC_004778.3 + 94977 0.7 0.486804
Target:  5'- uCGACCGCGgugCGCuCCUCGACgCgCAGCg -3'
miRNA:   3'- -GCUGGUGCg--GCG-GGAGUUGgGgGUUG- -5'
21214 5' -60.1 NC_004778.3 + 46717 0.7 0.486804
Target:  5'- gGACCGuuugaacgcguUGCCGCaCCUguGCCCgCGACg -3'
miRNA:   3'- gCUGGU-----------GCGGCG-GGAguUGGGgGUUG- -5'
21214 5' -60.1 NC_004778.3 + 115450 0.69 0.496196
Target:  5'- aGACCGCGCCcggGUCCUCAcauACCUCgCuGCa -3'
miRNA:   3'- gCUGGUGCGG---CGGGAGU---UGGGG-GuUG- -5'
21214 5' -60.1 NC_004778.3 + 128175 0.69 0.505668
Target:  5'- ---aCACGCCGCCgUCGuCCCCacaAGCg -3'
miRNA:   3'- gcugGUGCGGCGGgAGUuGGGGg--UUG- -5'
21214 5' -60.1 NC_004778.3 + 101998 0.69 0.515218
Target:  5'- gGACCGC-CCGCCCgauaaagGACCCCuCGAa -3'
miRNA:   3'- gCUGGUGcGGCGGGag-----UUGGGG-GUUg -5'
21214 5' -60.1 NC_004778.3 + 93130 0.69 0.528707
Target:  5'- aCGACCACGCCcuccggacugcccacGUUCUCAaugGCCCUCGu- -3'
miRNA:   3'- -GCUGGUGCGG---------------CGGGAGU---UGGGGGUug -5'
21214 5' -60.1 NC_004778.3 + 58205 0.69 0.534528
Target:  5'- cCGACacccuCGCCGacaCCCUCGccuacGCCCUCGGCg -3'
miRNA:   3'- -GCUGgu---GCGGC---GGGAGU-----UGGGGGUUG- -5'
21214 5' -60.1 NC_004778.3 + 83101 0.68 0.553105
Target:  5'- uCGACCagcuugcGCGCCGCgaUCGACUgguuaCCCAACg -3'
miRNA:   3'- -GCUGG-------UGCGGCGggAGUUGG-----GGGUUG- -5'
21214 5' -60.1 NC_004778.3 + 98765 0.68 0.554088
Target:  5'- gCGugCAaGCCGCCacc-AUCCCCAGCg -3'
miRNA:   3'- -GCugGUgCGGCGGgaguUGGGGGUUG- -5'
21214 5' -60.1 NC_004778.3 + 15740 0.68 0.554088
Target:  5'- aGugUugGCCGCCCgCAACCUa-AGCu -3'
miRNA:   3'- gCugGugCGGCGGGaGUUGGGggUUG- -5'
21214 5' -60.1 NC_004778.3 + 56931 0.68 0.573854
Target:  5'- gCGuCCGCGUCGUCgacgCUCAACgCCaCCGACg -3'
miRNA:   3'- -GCuGGUGCGGCGG----GAGUUG-GG-GGUUG- -5'
21214 5' -60.1 NC_004778.3 + 102635 0.68 0.573854
Target:  5'- --cCCGCGCgGCCCagCAACCUCUAucGCa -3'
miRNA:   3'- gcuGGUGCGgCGGGa-GUUGGGGGU--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.