miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21214 5' -60.1 NC_004778.3 + 4034 0.7 0.440305
Target:  5'- gCGAUCGCGCUGCCuaauagcagagugCUCAgaaGCUCUCAACg -3'
miRNA:   3'- -GCUGGUGCGGCGG-------------GAGU---UGGGGGUUG- -5'
21214 5' -60.1 NC_004778.3 + 4091 0.66 0.723302
Target:  5'- aGAUCGCGCaGCCCgu-ACUuauaCCCAGCg -3'
miRNA:   3'- gCUGGUGCGgCGGGaguUGG----GGGUUG- -5'
21214 5' -60.1 NC_004778.3 + 14550 0.66 0.723302
Target:  5'- aCGACCGCG-CGUCCaUGugCgCCAGCa -3'
miRNA:   3'- -GCUGGUGCgGCGGGaGUugGgGGUUG- -5'
21214 5' -60.1 NC_004778.3 + 15463 0.7 0.458247
Target:  5'- gCGACCACGCCaaagugcugccgcGCaUCUCcACCgCCAACg -3'
miRNA:   3'- -GCUGGUGCGG-------------CG-GGAGuUGGgGGUUG- -5'
21214 5' -60.1 NC_004778.3 + 15547 0.7 0.459154
Target:  5'- -cGCgGCGCCGCCUUCGcccgacGCgCCCGGCc -3'
miRNA:   3'- gcUGgUGCGGCGGGAGU------UGgGGGUUG- -5'
21214 5' -60.1 NC_004778.3 + 15740 0.68 0.554088
Target:  5'- aGugUugGCCGCCCgCAACCUa-AGCu -3'
miRNA:   3'- gCugGugCGGCGGGaGUUGGGggUUG- -5'
21214 5' -60.1 NC_004778.3 + 17616 0.67 0.643944
Target:  5'- uGACUauACGgCGCCCUC-GCCCuuguuaCCGGCg -3'
miRNA:   3'- gCUGG--UGCgGCGGGAGuUGGG------GGUUG- -5'
21214 5' -60.1 NC_004778.3 + 18640 0.73 0.320465
Target:  5'- aCGcCgCGCGCCGCCUaCcGCCCCCAAg -3'
miRNA:   3'- -GCuG-GUGCGGCGGGaGuUGGGGGUUg -5'
21214 5' -60.1 NC_004778.3 + 25786 0.66 0.683954
Target:  5'- uGACCGCguuGCCGCCacgCuGCCCCgCcGCg -3'
miRNA:   3'- gCUGGUG---CGGCGGga-GuUGGGG-GuUG- -5'
21214 5' -60.1 NC_004778.3 + 27198 0.67 0.633899
Target:  5'- uCGGCCuguAUGCCGCCCauguUCAugacgGCCUCgAACg -3'
miRNA:   3'- -GCUGG---UGCGGCGGG----AGU-----UGGGGgUUG- -5'
21214 5' -60.1 NC_004778.3 + 27496 0.68 0.59378
Target:  5'- cCGACCACaugGCCGUgUUCGacgaauACCCCgGGCu -3'
miRNA:   3'- -GCUGGUG---CGGCGgGAGU------UGGGGgUUG- -5'
21214 5' -60.1 NC_004778.3 + 28392 0.71 0.415017
Target:  5'- aCGGCCucaACGaCGCCCUCAaaACCauuCCCGGCa -3'
miRNA:   3'- -GCUGG---UGCgGCGGGAGU--UGG---GGGUUG- -5'
21214 5' -60.1 NC_004778.3 + 33379 0.66 0.683954
Target:  5'- aCGA-CGCGCCGUCUUUGgacGCgCCCAACc -3'
miRNA:   3'- -GCUgGUGCGGCGGGAGU---UGgGGGUUG- -5'
21214 5' -60.1 NC_004778.3 + 33666 0.66 0.683954
Target:  5'- gCGGCCggcGCGCUGCCgCgcggaUAGCgCCCGGCg -3'
miRNA:   3'- -GCUGG---UGCGGCGG-Ga----GUUGgGGGUUG- -5'
21214 5' -60.1 NC_004778.3 + 38146 0.66 0.673993
Target:  5'- aGGCCcgcuGCGCCGCUCgacACCUCCAc- -3'
miRNA:   3'- gCUGG----UGCGGCGGGaguUGGGGGUug -5'
21214 5' -60.1 NC_004778.3 + 39107 0.66 0.693874
Target:  5'- uGuuCAUGCCGCgCCUUAAUuacaaCCCGACg -3'
miRNA:   3'- gCugGUGCGGCG-GGAGUUGg----GGGUUG- -5'
21214 5' -60.1 NC_004778.3 + 41236 0.67 0.643944
Target:  5'- gCGGCCGCGCCGg---CAACCCCa--- -3'
miRNA:   3'- -GCUGGUGCGGCgggaGUUGGGGguug -5'
21214 5' -60.1 NC_004778.3 + 46717 0.7 0.486804
Target:  5'- gGACCGuuugaacgcguUGCCGCaCCUguGCCCgCGACg -3'
miRNA:   3'- gCUGGU-----------GCGGCG-GGAguUGGGgGUUG- -5'
21214 5' -60.1 NC_004778.3 + 47417 0.67 0.663999
Target:  5'- gGACCACG-CGCCa-----CCCCAACa -3'
miRNA:   3'- gCUGGUGCgGCGGgaguugGGGGUUG- -5'
21214 5' -60.1 NC_004778.3 + 47594 0.67 0.613813
Target:  5'- -uACCGcCGCCGCUCcCGAUCCgCCAAUg -3'
miRNA:   3'- gcUGGU-GCGGCGGGaGUUGGG-GGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.