miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21214 5' -60.1 NC_004778.3 + 14550 0.66 0.723302
Target:  5'- aCGACCGCG-CGUCCaUGugCgCCAGCa -3'
miRNA:   3'- -GCUGGUGCgGCGGGaGUugGgGGUUG- -5'
21214 5' -60.1 NC_004778.3 + 47417 0.67 0.663999
Target:  5'- gGACCACG-CGCCa-----CCCCAACa -3'
miRNA:   3'- gCUGGUGCgGCGGgaguugGGGGUUG- -5'
21214 5' -60.1 NC_004778.3 + 62485 0.67 0.663999
Target:  5'- uCGACCACGCUGUUCUggcgCAGCUCUUuuuGCa -3'
miRNA:   3'- -GCUGGUGCGGCGGGA----GUUGGGGGu--UG- -5'
21214 5' -60.1 NC_004778.3 + 38146 0.66 0.673993
Target:  5'- aGGCCcgcuGCGCCGCUCgacACCUCCAc- -3'
miRNA:   3'- gCUGG----UGCGGCGGGaguUGGGGGUug -5'
21214 5' -60.1 NC_004778.3 + 25786 0.66 0.683954
Target:  5'- uGACCGCguuGCCGCCacgCuGCCCCgCcGCg -3'
miRNA:   3'- gCUGGUG---CGGCGGga-GuUGGGG-GuUG- -5'
21214 5' -60.1 NC_004778.3 + 33379 0.66 0.683954
Target:  5'- aCGA-CGCGCCGUCUUUGgacGCgCCCAACc -3'
miRNA:   3'- -GCUgGUGCGGCGGGAGU---UGgGGGUUG- -5'
21214 5' -60.1 NC_004778.3 + 93006 0.66 0.693874
Target:  5'- cCGGCCGCGUgaaCGCgCagCAG-CCCCAACg -3'
miRNA:   3'- -GCUGGUGCG---GCGgGa-GUUgGGGGUUG- -5'
21214 5' -60.1 NC_004778.3 + 126939 0.66 0.703745
Target:  5'- uCGGCCACGCUGCgCUCGAaugggUgCUUGACa -3'
miRNA:   3'- -GCUGGUGCGGCGgGAGUU-----GgGGGUUG- -5'
21214 5' -60.1 NC_004778.3 + 93721 0.66 0.713557
Target:  5'- uCGACUugGUgCGgCC-CAACCCgCAGCu -3'
miRNA:   3'- -GCUGGugCG-GCgGGaGUUGGGgGUUG- -5'
21214 5' -60.1 NC_004778.3 + 100703 0.68 0.603786
Target:  5'- -cGCCuuUGCCGCCCggaAACUCCCAGu -3'
miRNA:   3'- gcUGGu-GCGGCGGGag-UUGGGGGUUg -5'
21214 5' -60.1 NC_004778.3 + 27496 0.68 0.59378
Target:  5'- cCGACCACaugGCCGUgUUCGacgaauACCCCgGGCu -3'
miRNA:   3'- -GCUGGUG---CGGCGgGAGU------UGGGGgUUG- -5'
21214 5' -60.1 NC_004778.3 + 121433 0.68 0.59378
Target:  5'- uCGGCCGuguCGCCGCCgUCGGCgCCgCGcACa -3'
miRNA:   3'- -GCUGGU---GCGGCGGgAGUUG-GGgGU-UG- -5'
21214 5' -60.1 NC_004778.3 + 18640 0.73 0.320465
Target:  5'- aCGcCgCGCGCCGCCUaCcGCCCCCAAg -3'
miRNA:   3'- -GCuG-GUGCGGCGGGaGuUGGGGGUUg -5'
21214 5' -60.1 NC_004778.3 + 15463 0.7 0.458247
Target:  5'- gCGACCACGCCaaagugcugccgcGCaUCUCcACCgCCAACg -3'
miRNA:   3'- -GCUGGUGCGG-------------CG-GGAGuUGGgGGUUG- -5'
21214 5' -60.1 NC_004778.3 + 57413 0.7 0.477498
Target:  5'- gCGGCUGaugaaGCCGCCCUCGucgcGCCCguCCAAUu -3'
miRNA:   3'- -GCUGGUg----CGGCGGGAGU----UGGG--GGUUG- -5'
21214 5' -60.1 NC_004778.3 + 128175 0.69 0.505668
Target:  5'- ---aCACGCCGCCgUCGuCCCCacaAGCg -3'
miRNA:   3'- gcugGUGCGGCGGgAGUuGGGGg--UUG- -5'
21214 5' -60.1 NC_004778.3 + 101998 0.69 0.515218
Target:  5'- gGACCGC-CCGCCCgauaaagGACCCCuCGAa -3'
miRNA:   3'- gCUGGUGcGGCGGGag-----UUGGGG-GUUg -5'
21214 5' -60.1 NC_004778.3 + 83101 0.68 0.553105
Target:  5'- uCGACCagcuugcGCGCCGCgaUCGACUgguuaCCCAACg -3'
miRNA:   3'- -GCUGG-------UGCGGCGggAGUUGG-----GGGUUG- -5'
21214 5' -60.1 NC_004778.3 + 15740 0.68 0.554088
Target:  5'- aGugUugGCCGCCCgCAACCUa-AGCu -3'
miRNA:   3'- gCugGugCGGCGGGaGUUGGGggUUG- -5'
21214 5' -60.1 NC_004778.3 + 98765 0.68 0.554088
Target:  5'- gCGugCAaGCCGCCacc-AUCCCCAGCg -3'
miRNA:   3'- -GCugGUgCGGCGGgaguUGGGGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.