miRNA display CGI


Results 21 - 40 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21215 3' -57.7 NC_004778.3 + 77361 0.74 0.363076
Target:  5'- -------uUGUGGCGCGCCGC-GCGCu -3'
miRNA:   3'- guuuuugcACGCCGCGCGGCGcCGCG- -5'
21215 3' -57.7 NC_004778.3 + 31730 0.74 0.370291
Target:  5'- --------cGCGGCGCGCUuuauggaguuuaaGCGGCGCg -3'
miRNA:   3'- guuuuugcaCGCCGCGCGG-------------CGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 110100 0.74 0.371098
Target:  5'- -cAAAACG-GCGuGCGCGCCGa-GCGCu -3'
miRNA:   3'- guUUUUGCaCGC-CGCGCGGCgcCGCG- -5'
21215 3' -57.7 NC_004778.3 + 25875 0.74 0.371098
Target:  5'- aGGGugUGUGcCGGCGCGaCCGUgGGCGCu -3'
miRNA:   3'- gUUUuuGCAC-GCCGCGC-GGCG-CCGCG- -5'
21215 3' -57.7 NC_004778.3 + 61001 0.74 0.371098
Target:  5'- gCGGcgGCGgcgGCGGCG-GCgGUGGCGCu -3'
miRNA:   3'- -GUUuuUGCa--CGCCGCgCGgCGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 70269 0.74 0.379241
Target:  5'- --uGGACG-GCGuGCGCgGCCGCGGCa- -3'
miRNA:   3'- guuUUUGCaCGC-CGCG-CGGCGCCGcg -5'
21215 3' -57.7 NC_004778.3 + 17092 0.74 0.379241
Target:  5'- aCAAGGcCGUGuuGCuGUGCgCGCGGCGCg -3'
miRNA:   3'- -GUUUUuGCACgcCG-CGCG-GCGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 72465 0.73 0.400964
Target:  5'- aCAAAGugGUGCGGUuauauuugugccaaGUGCCGCcgucgguGGCGUu -3'
miRNA:   3'- -GUUUUugCACGCCG--------------CGCGGCG-------CCGCG- -5'
21215 3' -57.7 NC_004778.3 + 92709 0.73 0.412984
Target:  5'- -cGAAACGUGCguuuauuaauauGGCGC-CgGCGGUGCg -3'
miRNA:   3'- guUUUUGCACG------------CCGCGcGgCGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 71273 0.73 0.421705
Target:  5'- aCGGcgGCGgcgGCGGCGaCGUCggGUGGCGCg -3'
miRNA:   3'- -GUUuuUGCa--CGCCGC-GCGG--CGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 100613 0.73 0.438577
Target:  5'- gCGAGAGCugauUGCGcuaauguGCGCgGCCGCGGCGUu -3'
miRNA:   3'- -GUUUUUGc---ACGC-------CGCG-CGGCGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 105123 0.72 0.448519
Target:  5'- aCGAuuACGaugGCuacauagaauuGG-GCGCCGCGGCGCg -3'
miRNA:   3'- -GUUuuUGCa--CG-----------CCgCGCGGCGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 67803 0.72 0.457664
Target:  5'- ---cGGCGU-UGGCGCGCgcuggcugCGCGGCGCc -3'
miRNA:   3'- guuuUUGCAcGCCGCGCG--------GCGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 99025 0.72 0.457664
Target:  5'- ---cAACGccCGGCaacGCGUCGCGGCGCu -3'
miRNA:   3'- guuuUUGCacGCCG---CGCGGCGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 80707 0.72 0.46598
Target:  5'- gAAGAGuCGUGCGuGCGaacccguCGCCGCGGCu- -3'
miRNA:   3'- gUUUUU-GCACGC-CGC-------GCGGCGCCGcg -5'
21215 3' -57.7 NC_004778.3 + 91338 0.72 0.470633
Target:  5'- gGAcgGCGUGCGcgcuagcgugcuguuGCGCGUCGCGcCGCa -3'
miRNA:   3'- gUUuuUGCACGC---------------CGCGCGGCGCcGCG- -5'
21215 3' -57.7 NC_004778.3 + 92908 0.72 0.476249
Target:  5'- -------aUGCGGCGCGUCaugguccaaaGCGGCGCc -3'
miRNA:   3'- guuuuugcACGCCGCGCGG----------CGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 1979 0.72 0.485681
Target:  5'- ----cGCGUGCacagcucGUGcCGCUGCGGCGCa -3'
miRNA:   3'- guuuuUGCACGc------CGC-GCGGCGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 118766 0.72 0.485681
Target:  5'- ----cACGUGCcacgcuucgGGCGCGgCGCGGCcgGCg -3'
miRNA:   3'- guuuuUGCACG---------CCGCGCgGCGCCG--CG- -5'
21215 3' -57.7 NC_004778.3 + 106451 0.72 0.485681
Target:  5'- ---cAACGcGCuGaGCGCGCUGCGcGCGCa -3'
miRNA:   3'- guuuUUGCaCG-C-CGCGCGGCGC-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.