miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21216 3' -54.1 NC_004778.3 + 86049 1.07 0.004671
Target:  5'- gCACGCCUGCCGCAAAACGUACGCGUGc -3'
miRNA:   3'- -GUGCGGACGGCGUUUUGCAUGCGCAC- -5'
21216 3' -54.1 NC_004778.3 + 80567 0.78 0.329513
Target:  5'- aCGCGCgUGCCGcCAAGGcCGUGCGCGa- -3'
miRNA:   3'- -GUGCGgACGGC-GUUUU-GCAUGCGCac -5'
21216 3' -54.1 NC_004778.3 + 87622 0.77 0.403499
Target:  5'- aACGCCU-CCGac-AGCGUGCGCGUGa -3'
miRNA:   3'- gUGCGGAcGGCguuUUGCAUGCGCAC- -5'
21216 3' -54.1 NC_004778.3 + 120030 0.75 0.477446
Target:  5'- cCACGCCaaacUGCUGCAGuuUGcGCGCGUGg -3'
miRNA:   3'- -GUGCGG----ACGGCGUUuuGCaUGCGCAC- -5'
21216 3' -54.1 NC_004778.3 + 58399 0.74 0.537033
Target:  5'- gACGCg-GCCucGCGAAACGUACGCGg- -3'
miRNA:   3'- gUGCGgaCGG--CGUUUUGCAUGCGCac -5'
21216 3' -54.1 NC_004778.3 + 8007 0.74 0.557487
Target:  5'- gGCGCCgacgGCgGCGAcACGgccgACGCGUGc -3'
miRNA:   3'- gUGCGGa---CGgCGUUuUGCa---UGCGCAC- -5'
21216 3' -54.1 NC_004778.3 + 107668 0.73 0.578156
Target:  5'- gACGCCcgUGUCGCGcGACGaaaccuUGCGCGUGg -3'
miRNA:   3'- gUGCGG--ACGGCGUuUUGC------AUGCGCAC- -5'
21216 3' -54.1 NC_004778.3 + 29267 0.73 0.598987
Target:  5'- aCAUGCCUGCCuccGCGAugcCGUGCGUGa- -3'
miRNA:   3'- -GUGCGGACGG---CGUUuu-GCAUGCGCac -5'
21216 3' -54.1 NC_004778.3 + 61979 0.73 0.61992
Target:  5'- gGCGCUUGCCGC------UGCGCGUGg -3'
miRNA:   3'- gUGCGGACGGCGuuuugcAUGCGCAC- -5'
21216 3' -54.1 NC_004778.3 + 1633 0.73 0.61992
Target:  5'- uGCGCUUGCUGCGcuGCGgaaagcgACGCGUc -3'
miRNA:   3'- gUGCGGACGGCGUuuUGCa------UGCGCAc -5'
21216 3' -54.1 NC_004778.3 + 44003 0.72 0.640891
Target:  5'- gGCGacCCUGCUGCGugggcGACGUcauACGCGUGg -3'
miRNA:   3'- gUGC--GGACGGCGUu----UUGCA---UGCGCAC- -5'
21216 3' -54.1 NC_004778.3 + 42145 0.72 0.640891
Target:  5'- -uCGCCUGCUuaacaacguGCAAAAUGUugGCGg- -3'
miRNA:   3'- guGCGGACGG---------CGUUUUGCAugCGCac -5'
21216 3' -54.1 NC_004778.3 + 65706 0.72 0.672272
Target:  5'- aCACuGCUUaaugaaagGCgCGCAcGACGUGCGCGUGa -3'
miRNA:   3'- -GUG-CGGA--------CG-GCGUuUUGCAUGCGCAC- -5'
21216 3' -54.1 NC_004778.3 + 10663 0.72 0.672272
Target:  5'- gCGCGCCgGCCGCGccGCGcccgaaGCGUGg -3'
miRNA:   3'- -GUGCGGaCGGCGUuuUGCaug---CGCAC- -5'
21216 3' -54.1 NC_004778.3 + 7753 0.71 0.693036
Target:  5'- gCGgGCCUGCaCGUGAAGCGcACGCGc- -3'
miRNA:   3'- -GUgCGGACG-GCGUUUUGCaUGCGCac -5'
21216 3' -54.1 NC_004778.3 + 97172 0.71 0.693036
Target:  5'- gGCGCC-GCCGgccAGCGUGCGCGg- -3'
miRNA:   3'- gUGCGGaCGGCguuUUGCAUGCGCac -5'
21216 3' -54.1 NC_004778.3 + 33425 0.71 0.703343
Target:  5'- -uCGCUcgUGUCGCGuuGACGUACGCGUu -3'
miRNA:   3'- guGCGG--ACGGCGUu-UUGCAUGCGCAc -5'
21216 3' -54.1 NC_004778.3 + 33672 0.71 0.703343
Target:  5'- gGCGCgCUGCCGCGcggauAGCGcccgGCGCGg- -3'
miRNA:   3'- gUGCG-GACGGCGUu----UUGCa---UGCGCac -5'
21216 3' -54.1 NC_004778.3 + 22884 0.71 0.72173
Target:  5'- aCGgGCCcGCUGCGAAcgaaaugaaaauCGUACGCGUGu -3'
miRNA:   3'- -GUgCGGaCGGCGUUUu-----------GCAUGCGCAC- -5'
21216 3' -54.1 NC_004778.3 + 27437 0.71 0.723758
Target:  5'- -uUGCCUG-CGCGAGgggcGCGUGCGCGa- -3'
miRNA:   3'- guGCGGACgGCGUUU----UGCAUGCGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.