miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21216 3' -54.1 NC_004778.3 + 7804 0.68 0.868664
Target:  5'- cCGCGgUUGCCGCuAAACaugACGCGUu -3'
miRNA:   3'- -GUGCgGACGGCGuUUUGca-UGCGCAc -5'
21216 3' -54.1 NC_004778.3 + 38537 0.69 0.819286
Target:  5'- uCACGCCUuuggcGUCGCAgucGAACGUG-GCGUa -3'
miRNA:   3'- -GUGCGGA-----CGGCGU---UUUGCAUgCGCAc -5'
21216 3' -54.1 NC_004778.3 + 103417 0.69 0.819286
Target:  5'- aCACGUCgUGCCGCc--AUGUugGCGg- -3'
miRNA:   3'- -GUGCGG-ACGGCGuuuUGCAugCGCac -5'
21216 3' -54.1 NC_004778.3 + 47391 0.69 0.82801
Target:  5'- gCGCGaCgUGUCGCAc-GCGcGCGCGUGg -3'
miRNA:   3'- -GUGC-GgACGGCGUuuUGCaUGCGCAC- -5'
21216 3' -54.1 NC_004778.3 + 50780 0.69 0.82801
Target:  5'- uCAUGCCgaugGCCGCGGuuagcuuuucGCGgcccACGCGUGu -3'
miRNA:   3'- -GUGCGGa---CGGCGUUu---------UGCa---UGCGCAC- -5'
21216 3' -54.1 NC_004778.3 + 80430 0.69 0.82801
Target:  5'- gGCGCCaGCCGCAccgcgcgcaacGAAUGUGCcaCGUGc -3'
miRNA:   3'- gUGCGGaCGGCGU-----------UUUGCAUGc-GCAC- -5'
21216 3' -54.1 NC_004778.3 + 69983 0.69 0.836545
Target:  5'- gCGCGCCcGCCGCAAAACcUGCaacugggcaGCGa- -3'
miRNA:   3'- -GUGCGGaCGGCGUUUUGcAUG---------CGCac -5'
21216 3' -54.1 NC_004778.3 + 89847 0.68 0.853024
Target:  5'- uCACGUuuucguaggCUGCCGCGGAGauguugccgcUGUGCaGCGUGg -3'
miRNA:   3'- -GUGCG---------GACGGCGUUUU----------GCAUG-CGCAC- -5'
21216 3' -54.1 NC_004778.3 + 33259 0.68 0.860952
Target:  5'- -cUGCC-GCCGUuuGAGCG-GCGCGUGg -3'
miRNA:   3'- guGCGGaCGGCGu-UUUGCaUGCGCAC- -5'
21216 3' -54.1 NC_004778.3 + 88013 0.7 0.782697
Target:  5'- gCGCGCUcagaCUGCAcAGCGUACGCGUu -3'
miRNA:   3'- -GUGCGGac--GGCGUuUUGCAUGCGCAc -5'
21216 3' -54.1 NC_004778.3 + 43368 0.7 0.772212
Target:  5'- uCGCGCCgugguguUGCCGCAGcacGCGUACguuuugcggcagGCGUGc -3'
miRNA:   3'- -GUGCGG-------ACGGCGUUu--UGCAUG------------CGCAC- -5'
21216 3' -54.1 NC_004778.3 + 85381 0.7 0.763514
Target:  5'- aCAuCGCC-GCCGCAAA-CGccCGCGUGg -3'
miRNA:   3'- -GU-GCGGaCGGCGUUUuGCauGCGCAC- -5'
21216 3' -54.1 NC_004778.3 + 29267 0.73 0.598987
Target:  5'- aCAUGCCUGCCuccGCGAugcCGUGCGUGa- -3'
miRNA:   3'- -GUGCGGACGG---CGUUuu-GCAUGCGCac -5'
21216 3' -54.1 NC_004778.3 + 1633 0.73 0.61992
Target:  5'- uGCGCUUGCUGCGcuGCGgaaagcgACGCGUc -3'
miRNA:   3'- gUGCGGACGGCGUuuUGCa------UGCGCAc -5'
21216 3' -54.1 NC_004778.3 + 61979 0.73 0.61992
Target:  5'- gGCGCUUGCCGC------UGCGCGUGg -3'
miRNA:   3'- gUGCGGACGGCGuuuugcAUGCGCAC- -5'
21216 3' -54.1 NC_004778.3 + 22884 0.71 0.72173
Target:  5'- aCGgGCCcGCUGCGAAcgaaaugaaaauCGUACGCGUGu -3'
miRNA:   3'- -GUgCGGaCGGCGUUUu-----------GCAUGCGCAC- -5'
21216 3' -54.1 NC_004778.3 + 27437 0.71 0.723758
Target:  5'- -uUGCCUG-CGCGAGgggcGCGUGCGCGa- -3'
miRNA:   3'- guGCGGACgGCGUUU----UGCAUGCGCac -5'
21216 3' -54.1 NC_004778.3 + 64160 0.71 0.723758
Target:  5'- uCGCGCCcgugGCCGCcGAGCuugACGCGUu -3'
miRNA:   3'- -GUGCGGa---CGGCGuUUUGca-UGCGCAc -5'
21216 3' -54.1 NC_004778.3 + 94697 0.71 0.733846
Target:  5'- uCGCGCUgaaCCGC-GAGCGUGCGCGc- -3'
miRNA:   3'- -GUGCGGac-GGCGuUUUGCAUGCGCac -5'
21216 3' -54.1 NC_004778.3 + 47355 0.7 0.753734
Target:  5'- gAUGCCgccGCUGCAcAGCGUGCgGCGUu -3'
miRNA:   3'- gUGCGGa--CGGCGUuUUGCAUG-CGCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.