miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21216 3' -54.1 NC_004778.3 + 1633 0.73 0.61992
Target:  5'- uGCGCUUGCUGCGcuGCGgaaagcgACGCGUc -3'
miRNA:   3'- gUGCGGACGGCGUuuUGCa------UGCGCAc -5'
21216 3' -54.1 NC_004778.3 + 7753 0.71 0.693036
Target:  5'- gCGgGCCUGCaCGUGAAGCGcACGCGc- -3'
miRNA:   3'- -GUgCGGACG-GCGUUUUGCaUGCGCac -5'
21216 3' -54.1 NC_004778.3 + 7804 0.68 0.868664
Target:  5'- cCGCGgUUGCCGCuAAACaugACGCGUu -3'
miRNA:   3'- -GUGCgGACGGCGuUUUGca-UGCGCAc -5'
21216 3' -54.1 NC_004778.3 + 8007 0.74 0.557487
Target:  5'- gGCGCCgacgGCgGCGAcACGgccgACGCGUGc -3'
miRNA:   3'- gUGCGGa---CGgCGUUuUGCa---UGCGCAC- -5'
21216 3' -54.1 NC_004778.3 + 8037 0.69 0.82801
Target:  5'- --nGCCUGCUGCucagccgcACGUGCcaGCGUGa -3'
miRNA:   3'- gugCGGACGGCGuuu-----UGCAUG--CGCAC- -5'
21216 3' -54.1 NC_004778.3 + 10663 0.72 0.672272
Target:  5'- gCGCGCCgGCCGCGccGCGcccgaaGCGUGg -3'
miRNA:   3'- -GUGCGGaCGGCGUuuUGCaug---CGCAC- -5'
21216 3' -54.1 NC_004778.3 + 17934 0.66 0.942617
Target:  5'- gUACGCCUGuuCCGU--GACGgACGUGUa -3'
miRNA:   3'- -GUGCGGAC--GGCGuuUUGCaUGCGCAc -5'
21216 3' -54.1 NC_004778.3 + 19416 0.68 0.883411
Target:  5'- uCACGCCUaCCGCGGucAGCGcgACaucgGCGUGg -3'
miRNA:   3'- -GUGCGGAcGGCGUU--UUGCa-UG----CGCAC- -5'
21216 3' -54.1 NC_004778.3 + 20923 0.66 0.932769
Target:  5'- aUACGCCaugGCCGUcucGAACG-ACGCGc- -3'
miRNA:   3'- -GUGCGGa--CGGCGu--UUUGCaUGCGCac -5'
21216 3' -54.1 NC_004778.3 + 21894 0.7 0.792081
Target:  5'- gGCGCgCUGCUcuGCGguAAGCG-ACGCGUGc -3'
miRNA:   3'- gUGCG-GACGG--CGU--UUUGCaUGCGCAC- -5'
21216 3' -54.1 NC_004778.3 + 22187 0.66 0.942617
Target:  5'- aACGCCgaaGcCCGCAAAACGUuuaGCa-- -3'
miRNA:   3'- gUGCGGa--C-GGCGUUUUGCAug-CGcac -5'
21216 3' -54.1 NC_004778.3 + 22884 0.71 0.72173
Target:  5'- aCGgGCCcGCUGCGAAcgaaaugaaaauCGUACGCGUGu -3'
miRNA:   3'- -GUgCGGaCGGCGUUUu-----------GCAUGCGCAC- -5'
21216 3' -54.1 NC_004778.3 + 25468 0.66 0.937818
Target:  5'- uGCGCCuUGCCGguuugacaagaCGAAGCuuGUGCGCuGUGu -3'
miRNA:   3'- gUGCGG-ACGGC-----------GUUUUG--CAUGCG-CAC- -5'
21216 3' -54.1 NC_004778.3 + 27437 0.71 0.723758
Target:  5'- -uUGCCUG-CGCGAGgggcGCGUGCGCGa- -3'
miRNA:   3'- guGCGGACgGCGUUU----UGCAUGCGCac -5'
21216 3' -54.1 NC_004778.3 + 29267 0.73 0.598987
Target:  5'- aCAUGCCUGCCuccGCGAugcCGUGCGUGa- -3'
miRNA:   3'- -GUGCGGACGG---CGUUuu-GCAUGCGCac -5'
21216 3' -54.1 NC_004778.3 + 33259 0.68 0.860952
Target:  5'- -cUGCC-GCCGUuuGAGCG-GCGCGUGg -3'
miRNA:   3'- guGCGGaCGGCGu-UUUGCaUGCGCAC- -5'
21216 3' -54.1 NC_004778.3 + 33425 0.71 0.703343
Target:  5'- -uCGCUcgUGUCGCGuuGACGUACGCGUu -3'
miRNA:   3'- guGCGG--ACGGCGUu-UUGCAUGCGCAc -5'
21216 3' -54.1 NC_004778.3 + 33672 0.71 0.703343
Target:  5'- gGCGCgCUGCCGCGcggauAGCGcccgGCGCGg- -3'
miRNA:   3'- gUGCG-GACGGCGUu----UUGCa---UGCGCac -5'
21216 3' -54.1 NC_004778.3 + 36572 0.7 0.753734
Target:  5'- gACGCCgaGCCGUucucggccGAAGCGUGCaCGUGc -3'
miRNA:   3'- gUGCGGa-CGGCG--------UUUUGCAUGcGCAC- -5'
21216 3' -54.1 NC_004778.3 + 38232 0.66 0.937324
Target:  5'- -gUGCCUcUUGCAAAAacguuccaauaucCGUGCGCGUGa -3'
miRNA:   3'- guGCGGAcGGCGUUUU-------------GCAUGCGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.