miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21218 3' -53.2 NC_004778.3 + 45657 1.14 0.002571
Target:  5'- aUCCGCGACGACAUGUCUUCGGACAGCg -3'
miRNA:   3'- -AGGCGCUGCUGUACAGAAGCCUGUCG- -5'
21218 3' -53.2 NC_004778.3 + 95378 0.81 0.313718
Target:  5'- gUCCGCGGCGAUuugGUUgaacaCGGGCAGCa -3'
miRNA:   3'- -AGGCGCUGCUGua-CAGaa---GCCUGUCG- -5'
21218 3' -53.2 NC_004778.3 + 47891 0.76 0.534334
Target:  5'- gCgGCGACGAgGaGUCUUUGGGCuAGCg -3'
miRNA:   3'- aGgCGCUGCUgUaCAGAAGCCUG-UCG- -5'
21218 3' -53.2 NC_004778.3 + 33360 0.74 0.641598
Target:  5'- gCCGCgGGCGACGUcgcggacgacgcgccGUCUUUGGACGcGCc -3'
miRNA:   3'- aGGCG-CUGCUGUA---------------CAGAAGCCUGU-CG- -5'
21218 3' -53.2 NC_004778.3 + 93540 0.74 0.658248
Target:  5'- cUCCGUGcACGACA--UCcUCGGGCAGUu -3'
miRNA:   3'- -AGGCGC-UGCUGUacAGaAGCCUGUCG- -5'
21218 3' -53.2 NC_004778.3 + 7163 0.74 0.658248
Target:  5'- aCCGCGACGAUAUGcgCgacaagaUCGaGACGGUg -3'
miRNA:   3'- aGGCGCUGCUGUACa-Ga------AGC-CUGUCG- -5'
21218 3' -53.2 NC_004778.3 + 38306 0.72 0.719887
Target:  5'- --aGCGugGAgGUGUCgagCGGcGCAGCg -3'
miRNA:   3'- aggCGCugCUgUACAGaa-GCC-UGUCG- -5'
21218 3' -53.2 NC_004778.3 + 43400 0.72 0.749782
Target:  5'- uUuuGCGGCaGGCGUG-CgagccggCGGACAGCg -3'
miRNA:   3'- -AggCGCUG-CUGUACaGaa-----GCCUGUCG- -5'
21218 3' -53.2 NC_004778.3 + 100872 0.71 0.769192
Target:  5'- aCgGCGugGACAUugacugggaGUUUcCGGGCGGCa -3'
miRNA:   3'- aGgCGCugCUGUA---------CAGAaGCCUGUCG- -5'
21218 3' -53.2 NC_004778.3 + 33668 0.71 0.788097
Target:  5'- gUUCGCGAUGAgCAUGagcaUGGACAGCg -3'
miRNA:   3'- -AGGCGCUGCU-GUACagaaGCCUGUCG- -5'
21218 3' -53.2 NC_004778.3 + 59766 0.71 0.788097
Target:  5'- aUCCG-GACGACcgGUUUUCGGcCAaGUg -3'
miRNA:   3'- -AGGCgCUGCUGuaCAGAAGCCuGU-CG- -5'
21218 3' -53.2 NC_004778.3 + 5081 0.71 0.797336
Target:  5'- aCCGCGGCGACAaaaccgGUCUgugCGcGaacguGCAGCu -3'
miRNA:   3'- aGGCGCUGCUGUa-----CAGAa--GC-C-----UGUCG- -5'
21218 3' -53.2 NC_004778.3 + 85459 0.71 0.797336
Target:  5'- gCgGCGACGGCAUGgacgCGGGCGuuuGCg -3'
miRNA:   3'- aGgCGCUGCUGUACagaaGCCUGU---CG- -5'
21218 3' -53.2 NC_004778.3 + 121700 0.71 0.806419
Target:  5'- gCCgGCGugGGCGUGUUgcUGGcCGGCg -3'
miRNA:   3'- aGG-CGCugCUGUACAGaaGCCuGUCG- -5'
21218 3' -53.2 NC_004778.3 + 85429 0.7 0.841032
Target:  5'- gCgGCGACGGCAUGgacgCGGGC-GCc -3'
miRNA:   3'- aGgCGCUGCUGUACagaaGCCUGuCG- -5'
21218 3' -53.2 NC_004778.3 + 27884 0.7 0.841032
Target:  5'- -aCGCGGCGGCgaGUGUgUggCGGcCAGCg -3'
miRNA:   3'- agGCGCUGCUG--UACAgAa-GCCuGUCG- -5'
21218 3' -53.2 NC_004778.3 + 26840 0.7 0.841032
Target:  5'- uUCCGCuGCG-CAgacgCUauUCGGACAGCa -3'
miRNA:   3'- -AGGCGcUGCuGUaca-GA--AGCCUGUCG- -5'
21218 3' -53.2 NC_004778.3 + 73637 0.7 0.85719
Target:  5'- -aCGCGgaACGACGuagcucgcgcaUGUCgcgcUCGGACAGUg -3'
miRNA:   3'- agGCGC--UGCUGU-----------ACAGa---AGCCUGUCG- -5'
21218 3' -53.2 NC_004778.3 + 44859 0.69 0.864956
Target:  5'- uUuuGUGuggccuGCGACAUGUCUUUGGAaacguuGGCg -3'
miRNA:   3'- -AggCGC------UGCUGUACAGAAGCCUg-----UCG- -5'
21218 3' -53.2 NC_004778.3 + 56113 0.69 0.864956
Target:  5'- --gGCGGCGACAUGUg--CGuGCAGCa -3'
miRNA:   3'- aggCGCUGCUGUACAgaaGCcUGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.