Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21218 | 3' | -53.2 | NC_004778.3 | + | 47891 | 0.76 | 0.534334 |
Target: 5'- gCgGCGACGAgGaGUCUUUGGGCuAGCg -3' miRNA: 3'- aGgCGCUGCUgUaCAGAAGCCUG-UCG- -5' |
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21218 | 3' | -53.2 | NC_004778.3 | + | 25426 | 0.66 | 0.970635 |
Target: 5'- gUCCGCGACGACcacaGUCUguUCGuuCAuucuGCa -3' miRNA: 3'- -AGGCGCUGCUGua--CAGA--AGCcuGU----CG- -5' |
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21218 | 3' | -53.2 | NC_004778.3 | + | 22377 | 0.66 | 0.970635 |
Target: 5'- cCCGUGGCGuuGggGUCUUCguGGAUGGUu -3' miRNA: 3'- aGGCGCUGCugUa-CAGAAG--CCUGUCG- -5' |
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21218 | 3' | -53.2 | NC_004778.3 | + | 104434 | 0.66 | 0.967594 |
Target: 5'- -aUGCGGCGACAUGU--UCGG-CAacucGCa -3' miRNA: 3'- agGCGCUGCUGUACAgaAGCCuGU----CG- -5' |
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21218 | 3' | -53.2 | NC_004778.3 | + | 6181 | 0.66 | 0.964337 |
Target: 5'- cUCCGUGGCGACuUGUCg-CGGGucGUa -3' miRNA: 3'- -AGGCGCUGCUGuACAGaaGCCUguCG- -5' |
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21218 | 3' | -53.2 | NC_004778.3 | + | 98729 | 0.66 | 0.960858 |
Target: 5'- gCCGCGGCcgcaGCGUG-CUUCGuGuuguaGCAGCg -3' miRNA: 3'- aGGCGCUGc---UGUACaGAAGC-C-----UGUCG- -5' |
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21218 | 3' | -53.2 | NC_004778.3 | + | 118747 | 0.67 | 0.944614 |
Target: 5'- -gCGCGGCGGCGcacaccaacacgUGccacgCUUCGGGCgcGGCg -3' miRNA: 3'- agGCGCUGCUGU------------ACa----GAAGCCUG--UCG- -5' |
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21218 | 3' | -53.2 | NC_004778.3 | + | 82628 | 0.67 | 0.944614 |
Target: 5'- gCCGCGcgauaGCGucGCAUGUCgaccaaagCGGACuuGGCg -3' miRNA: 3'- aGGCGC-----UGC--UGUACAGaa------GCCUG--UCG- -5' |
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21218 | 3' | -53.2 | NC_004778.3 | + | 72804 | 0.67 | 0.935046 |
Target: 5'- -gCGCGuuCGAgGUGUUcgggUUGGGCAGCc -3' miRNA: 3'- agGCGCu-GCUgUACAGa---AGCCUGUCG- -5' |
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21218 | 3' | -53.2 | NC_004778.3 | + | 65376 | 0.67 | 0.935046 |
Target: 5'- uUUCGCGACGAUuUGaCaggUUCGGAC-GCg -3' miRNA: 3'- -AGGCGCUGCUGuACaG---AAGCCUGuCG- -5' |
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21218 | 3' | -53.2 | NC_004778.3 | + | 33360 | 0.74 | 0.641598 |
Target: 5'- gCCGCgGGCGACGUcgcggacgacgcgccGUCUUUGGACGcGCc -3' miRNA: 3'- aGGCG-CUGCUGUA---------------CAGAAGCCUGU-CG- -5' |
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21218 | 3' | -53.2 | NC_004778.3 | + | 43400 | 0.72 | 0.749782 |
Target: 5'- uUuuGCGGCaGGCGUG-CgagccggCGGACAGCg -3' miRNA: 3'- -AggCGCUG-CUGUACaGaa-----GCCUGUCG- -5' |
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21218 | 3' | -53.2 | NC_004778.3 | + | 5081 | 0.71 | 0.797336 |
Target: 5'- aCCGCGGCGACAaaaccgGUCUgugCGcGaacguGCAGCu -3' miRNA: 3'- aGGCGCUGCUGUa-----CAGAa--GC-C-----UGUCG- -5' |
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21218 | 3' | -53.2 | NC_004778.3 | + | 27884 | 0.7 | 0.841032 |
Target: 5'- -aCGCGGCGGCgaGUGUgUggCGGcCAGCg -3' miRNA: 3'- agGCGCUGCUG--UACAgAa-GCCuGUCG- -5' |
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21218 | 3' | -53.2 | NC_004778.3 | + | 44859 | 0.69 | 0.864956 |
Target: 5'- uUuuGUGuggccuGCGACAUGUCUUUGGAaacguuGGCg -3' miRNA: 3'- -AggCGC------UGCUGUACAGAAGCCUg-----UCG- -5' |
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21218 | 3' | -53.2 | NC_004778.3 | + | 9083 | 0.68 | 0.912945 |
Target: 5'- gUCCGuCGACGgagcaaucuACGUGagCUUCGGcucCAGCa -3' miRNA: 3'- -AGGC-GCUGC---------UGUACa-GAAGCCu--GUCG- -5' |
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21218 | 3' | -53.2 | NC_004778.3 | + | 45657 | 1.14 | 0.002571 |
Target: 5'- aUCCGCGACGACAUGUCUUCGGACAGCg -3' miRNA: 3'- -AGGCGCUGCUGUACAGAAGCCUGUCG- -5' |
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21218 | 3' | -53.2 | NC_004778.3 | + | 111630 | 0.66 | 0.963999 |
Target: 5'- cUCGCGAccgauauuggauuCGACAUGUUguu-GACAGCa -3' miRNA: 3'- aGGCGCU-------------GCUGUACAGaagcCUGUCG- -5' |
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21218 | 3' | -53.2 | NC_004778.3 | + | 52192 | 0.66 | 0.95715 |
Target: 5'- -aUGCGACGucauCAUGUgCaUCGGACuuGCg -3' miRNA: 3'- agGCGCUGCu---GUACA-GaAGCCUGu-CG- -5' |
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21218 | 3' | -53.2 | NC_004778.3 | + | 97048 | 0.67 | 0.953209 |
Target: 5'- cCCGCGACGACGgcgccGUacgCGcAUAGCg -3' miRNA: 3'- aGGCGCUGCUGUa----CAgaaGCcUGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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