miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21218 3' -53.2 NC_004778.3 + 5081 0.71 0.797336
Target:  5'- aCCGCGGCGACAaaaccgGUCUgugCGcGaacguGCAGCu -3'
miRNA:   3'- aGGCGCUGCUGUa-----CAGAa--GC-C-----UGUCG- -5'
21218 3' -53.2 NC_004778.3 + 6181 0.66 0.964337
Target:  5'- cUCCGUGGCGACuUGUCg-CGGGucGUa -3'
miRNA:   3'- -AGGCGCUGCUGuACAGaaGCCUguCG- -5'
21218 3' -53.2 NC_004778.3 + 7163 0.74 0.658248
Target:  5'- aCCGCGACGAUAUGcgCgacaagaUCGaGACGGUg -3'
miRNA:   3'- aGGCGCUGCUGUACa-Ga------AGC-CUGUCG- -5'
21218 3' -53.2 NC_004778.3 + 9083 0.68 0.912945
Target:  5'- gUCCGuCGACGgagcaaucuACGUGagCUUCGGcucCAGCa -3'
miRNA:   3'- -AGGC-GCUGC---------UGUACa-GAAGCCu--GUCG- -5'
21218 3' -53.2 NC_004778.3 + 16312 0.67 0.949032
Target:  5'- aUCCGCGACGcGCAcGUCgc---ACAGCg -3'
miRNA:   3'- -AGGCGCUGC-UGUaCAGaagccUGUCG- -5'
21218 3' -53.2 NC_004778.3 + 22377 0.66 0.970635
Target:  5'- cCCGUGGCGuuGggGUCUUCguGGAUGGUu -3'
miRNA:   3'- aGGCGCUGCugUa-CAGAAG--CCUGUCG- -5'
21218 3' -53.2 NC_004778.3 + 25426 0.66 0.970635
Target:  5'- gUCCGCGACGACcacaGUCUguUCGuuCAuucuGCa -3'
miRNA:   3'- -AGGCGCUGCUGua--CAGA--AGCcuGU----CG- -5'
21218 3' -53.2 NC_004778.3 + 26840 0.7 0.841032
Target:  5'- uUCCGCuGCG-CAgacgCUauUCGGACAGCa -3'
miRNA:   3'- -AGGCGcUGCuGUaca-GA--AGCCUGUCG- -5'
21218 3' -53.2 NC_004778.3 + 27884 0.7 0.841032
Target:  5'- -aCGCGGCGGCgaGUGUgUggCGGcCAGCg -3'
miRNA:   3'- agGCGCUGCUG--UACAgAa-GCCuGUCG- -5'
21218 3' -53.2 NC_004778.3 + 33360 0.74 0.641598
Target:  5'- gCCGCgGGCGACGUcgcggacgacgcgccGUCUUUGGACGcGCc -3'
miRNA:   3'- aGGCG-CUGCUGUA---------------CAGAAGCCUGU-CG- -5'
21218 3' -53.2 NC_004778.3 + 33668 0.71 0.788097
Target:  5'- gUUCGCGAUGAgCAUGagcaUGGACAGCg -3'
miRNA:   3'- -AGGCGCUGCU-GUACagaaGCCUGUCG- -5'
21218 3' -53.2 NC_004778.3 + 35962 0.67 0.949032
Target:  5'- -gUGCGGCG-CcgGg--UCGGGCAGCc -3'
miRNA:   3'- agGCGCUGCuGuaCagaAGCCUGUCG- -5'
21218 3' -53.2 NC_004778.3 + 38306 0.72 0.719887
Target:  5'- --aGCGugGAgGUGUCgagCGGcGCAGCg -3'
miRNA:   3'- aggCGCugCUgUACAGaa-GCC-UGUCG- -5'
21218 3' -53.2 NC_004778.3 + 43400 0.72 0.749782
Target:  5'- uUuuGCGGCaGGCGUG-CgagccggCGGACAGCg -3'
miRNA:   3'- -AggCGCUG-CUGUACaGaa-----GCCUGUCG- -5'
21218 3' -53.2 NC_004778.3 + 44013 0.67 0.935046
Target:  5'- cUCC-CGAgcCGGCAccUGUUgccgcgUCGGACGGCc -3'
miRNA:   3'- -AGGcGCU--GCUGU--ACAGa-----AGCCUGUCG- -5'
21218 3' -53.2 NC_004778.3 + 44859 0.69 0.864956
Target:  5'- uUuuGUGuggccuGCGACAUGUCUUUGGAaacguuGGCg -3'
miRNA:   3'- -AggCGC------UGCUGUACAGAAGCCUg-----UCG- -5'
21218 3' -53.2 NC_004778.3 + 45657 1.14 0.002571
Target:  5'- aUCCGCGACGACAUGUCUUCGGACAGCg -3'
miRNA:   3'- -AGGCGCUGCUGUACAGAAGCCUGUCG- -5'
21218 3' -53.2 NC_004778.3 + 47891 0.76 0.534334
Target:  5'- gCgGCGACGAgGaGUCUUUGGGCuAGCg -3'
miRNA:   3'- aGgCGCUGCUgUaCAGAAGCCUG-UCG- -5'
21218 3' -53.2 NC_004778.3 + 49700 0.67 0.944614
Target:  5'- uUCCGCGACGGCAac-UUUUGG-UGGCc -3'
miRNA:   3'- -AGGCGCUGCUGUacaGAAGCCuGUCG- -5'
21218 3' -53.2 NC_004778.3 + 52192 0.66 0.95715
Target:  5'- -aUGCGACGucauCAUGUgCaUCGGACuuGCg -3'
miRNA:   3'- agGCGCUGCu---GUACA-GaAGCCUGu-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.