miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21219 5' -53.3 NC_004778.3 + 81839 0.66 0.964262
Target:  5'- gCCGCC---AUUGGCGgaucgggaGCGGCGGCGGu -3'
miRNA:   3'- aGGUGGcuuUGACUGC--------UGUCGUCGCU- -5'
21219 5' -53.3 NC_004778.3 + 44083 0.66 0.964262
Target:  5'- gUCAUgGAcGCgGGCGuuuGCGGCGGCGAu -3'
miRNA:   3'- aGGUGgCUuUGaCUGC---UGUCGUCGCU- -5'
21219 5' -53.3 NC_004778.3 + 119946 0.66 0.960743
Target:  5'- uUCCGCCGcacgugaaccuGugUGACGACGcGCAGgcaGAg -3'
miRNA:   3'- -AGGUGGCu----------UugACUGCUGU-CGUCg--CU- -5'
21219 5' -53.3 NC_004778.3 + 1266 0.66 0.956993
Target:  5'- gCUugUGGg---GACGACGGCGGCGu -3'
miRNA:   3'- aGGugGCUuugaCUGCUGUCGUCGCu -5'
21219 5' -53.3 NC_004778.3 + 46231 0.66 0.953005
Target:  5'- gCCGCUGAAAUguugcacaacaUGAacggcgcacaGACGGCAGCGu -3'
miRNA:   3'- aGGUGGCUUUG-----------ACUg---------CUGUCGUCGCu -5'
21219 5' -53.3 NC_004778.3 + 14359 0.66 0.953005
Target:  5'- aUCGCUGAcgAAgUGGUGACAGCAGCc- -3'
miRNA:   3'- aGGUGGCU--UUgACUGCUGUCGUCGcu -5'
21219 5' -53.3 NC_004778.3 + 71263 0.66 0.953005
Target:  5'- -gCAuUCGGAcACggcGGCGGCGGCGGCGAc -3'
miRNA:   3'- agGU-GGCUU-UGa--CUGCUGUCGUCGCU- -5'
21219 5' -53.3 NC_004778.3 + 100844 0.66 0.948775
Target:  5'- gCCGCCGAug--GACGGCagaauuuugAGguGCGGa -3'
miRNA:   3'- aGGUGGCUuugaCUGCUG---------UCguCGCU- -5'
21219 5' -53.3 NC_004778.3 + 309 0.66 0.948775
Target:  5'- cCCACCuGAGcgcguGCUGGCGcaagaauuugUAGCAGCGGu -3'
miRNA:   3'- aGGUGG-CUU-----UGACUGCu---------GUCGUCGCU- -5'
21219 5' -53.3 NC_004778.3 + 119996 0.66 0.948775
Target:  5'- gCCGCCGA----GACGACGGCcGUGu -3'
miRNA:   3'- aGGUGGCUuugaCUGCUGUCGuCGCu -5'
21219 5' -53.3 NC_004778.3 + 103375 0.66 0.948775
Target:  5'- -gCGCCGugGCc-ACGACGGCGGUGGc -3'
miRNA:   3'- agGUGGCuuUGacUGCUGUCGUCGCU- -5'
21219 5' -53.3 NC_004778.3 + 121749 0.67 0.939576
Target:  5'- --aACCGugcAACUGA--ACAGCGGCGAg -3'
miRNA:   3'- aggUGGCu--UUGACUgcUGUCGUCGCU- -5'
21219 5' -53.3 NC_004778.3 + 100260 0.67 0.939576
Target:  5'- gCUGCCG-AGC-GACGACccguGGCAGCGu -3'
miRNA:   3'- aGGUGGCuUUGaCUGCUG----UCGUCGCu -5'
21219 5' -53.3 NC_004778.3 + 75149 0.67 0.934603
Target:  5'- gCCGCCGggGCgGGCucacuGGCcGCAGCu- -3'
miRNA:   3'- aGGUGGCuuUGaCUG-----CUGuCGUCGcu -5'
21219 5' -53.3 NC_004778.3 + 38634 0.67 0.929378
Target:  5'- uUCCAUUGugGCUG-CgGGCAGUAGCGu -3'
miRNA:   3'- -AGGUGGCuuUGACuG-CUGUCGUCGCu -5'
21219 5' -53.3 NC_004778.3 + 17096 0.67 0.929378
Target:  5'- gUCGgCGAGGCUG-CGACAGCA-UGAg -3'
miRNA:   3'- aGGUgGCUUUGACuGCUGUCGUcGCU- -5'
21219 5' -53.3 NC_004778.3 + 118108 0.67 0.9239
Target:  5'- gCCAUCGAGGaguUUGAcaaaauCGGCGGCGGCGc -3'
miRNA:   3'- aGGUGGCUUU---GACU------GCUGUCGUCGCu -5'
21219 5' -53.3 NC_004778.3 + 36423 0.67 0.91817
Target:  5'- aUCCugCGuuggGGCUGcugcgcguucacGCGGcCGGCGGCGAc -3'
miRNA:   3'- -AGGugGCu---UUGAC------------UGCU-GUCGUCGCU- -5'
21219 5' -53.3 NC_004778.3 + 68055 0.68 0.912188
Target:  5'- uUCCGCUcAAACUGGCGcuCAGCGaCGAc -3'
miRNA:   3'- -AGGUGGcUUUGACUGCu-GUCGUcGCU- -5'
21219 5' -53.3 NC_004778.3 + 111251 0.68 0.912188
Target:  5'- cCCACCacGGAACUGGCuuuGAUAGCAauGCGc -3'
miRNA:   3'- aGGUGG--CUUUGACUG---CUGUCGU--CGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.