miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21220 5' -58.6 NC_004778.3 + 121259 0.66 0.792335
Target:  5'- gCGGCGGgGUCGCUcUGccGGCacACCGUu -3'
miRNA:   3'- -GCCGCCgUAGUGGaGCaaCCG--UGGCA- -5'
21220 5' -58.6 NC_004778.3 + 35983 0.66 0.792335
Target:  5'- cCGaCGGcCGUCAaCUCGUugggaUGGCACCGc -3'
miRNA:   3'- -GCcGCC-GUAGUgGAGCA-----ACCGUGGCa -5'
21220 5' -58.6 NC_004778.3 + 86306 0.66 0.783258
Target:  5'- aCGuGCGGCG-CGCCgc---GGCGCCGUc -3'
miRNA:   3'- -GC-CGCCGUaGUGGagcaaCCGUGGCA- -5'
21220 5' -58.6 NC_004778.3 + 19508 0.66 0.783258
Target:  5'- uGGuuGCG-CACCUCGUcgGGCACUu- -3'
miRNA:   3'- gCCgcCGUaGUGGAGCAa-CCGUGGca -5'
21220 5' -58.6 NC_004778.3 + 83230 0.66 0.774047
Target:  5'- gCGGCGGCcagCugCacgggCGaUUGGCugCGUu -3'
miRNA:   3'- -GCCGCCGua-GugGa----GC-AACCGugGCA- -5'
21220 5' -58.6 NC_004778.3 + 67779 0.66 0.765651
Target:  5'- uCGGCGGCuggcccagcaugcgCGCggCGUUGGCGCgCGc -3'
miRNA:   3'- -GCCGCCGua------------GUGgaGCAACCGUG-GCa -5'
21220 5' -58.6 NC_004778.3 + 97162 0.66 0.755261
Target:  5'- uGGU-GCAUUGCUgggCGUUGGCGCUGc -3'
miRNA:   3'- gCCGcCGUAGUGGa--GCAACCGUGGCa -5'
21220 5' -58.6 NC_004778.3 + 8807 0.66 0.755261
Target:  5'- aGGCGGCGggCGCgCUCagcgaaUGGCGCCu- -3'
miRNA:   3'- gCCGCCGUa-GUG-GAGca----ACCGUGGca -5'
21220 5' -58.6 NC_004778.3 + 93514 0.66 0.755261
Target:  5'- uCGGCGGCuuccucguaauGUCGCguUUCGUUGaGCACUa- -3'
miRNA:   3'- -GCCGCCG-----------UAGUG--GAGCAAC-CGUGGca -5'
21220 5' -58.6 NC_004778.3 + 117787 0.66 0.75431
Target:  5'- cCGGCGGUGUCgaugagcauACCgaacaaaaauuaaUCGUggaccgcGGCGCCGUa -3'
miRNA:   3'- -GCCGCCGUAG---------UGG-------------AGCAa------CCGUGGCA- -5'
21220 5' -58.6 NC_004778.3 + 76940 0.66 0.745703
Target:  5'- gGGCGGC---GCUUCGUUGGUGCa-- -3'
miRNA:   3'- gCCGCCGuagUGGAGCAACCGUGgca -5'
21220 5' -58.6 NC_004778.3 + 64165 0.66 0.745703
Target:  5'- gCGGUGGgcgucCAUCACgUCGUacaauUGcGCGCCGa -3'
miRNA:   3'- -GCCGCC-----GUAGUGgAGCA-----AC-CGUGGCa -5'
21220 5' -58.6 NC_004778.3 + 1648 0.67 0.736047
Target:  5'- gCGGaaaGCGaCGCgUCGUUGGCACCu- -3'
miRNA:   3'- -GCCgc-CGUaGUGgAGCAACCGUGGca -5'
21220 5' -58.6 NC_004778.3 + 101868 0.67 0.736047
Target:  5'- cCGGUGGCGcgCAggcagcgguCCaCGUUGGCACgGUa -3'
miRNA:   3'- -GCCGCCGUa-GU---------GGaGCAACCGUGgCA- -5'
21220 5' -58.6 NC_004778.3 + 29388 0.67 0.726302
Target:  5'- gGGCGaCAcCACCacggCGUUGGUACUGg -3'
miRNA:   3'- gCCGCcGUaGUGGa---GCAACCGUGGCa -5'
21220 5' -58.6 NC_004778.3 + 59035 0.67 0.726302
Target:  5'- uCGGCGGCua-ACCgcucggCGUUGGCcuccaGCCa- -3'
miRNA:   3'- -GCCGCCGuagUGGa-----GCAACCG-----UGGca -5'
21220 5' -58.6 NC_004778.3 + 21715 0.67 0.726302
Target:  5'- uGcGCGGCGUCuauACCUCGUcGcGCuacuCCGUa -3'
miRNA:   3'- gC-CGCCGUAG---UGGAGCAaC-CGu---GGCA- -5'
21220 5' -58.6 NC_004778.3 + 105148 0.67 0.696624
Target:  5'- gGGCGccGCggCGCgCUUGUUGGCuCCGUu -3'
miRNA:   3'- gCCGC--CGuaGUG-GAGCAACCGuGGCA- -5'
21220 5' -58.6 NC_004778.3 + 44745 0.68 0.676558
Target:  5'- gGGCGGC-UCGCCagGUUG-CAUCGa -3'
miRNA:   3'- gCCGCCGuAGUGGagCAACcGUGGCa -5'
21220 5' -58.6 NC_004778.3 + 44162 0.68 0.676558
Target:  5'- gCGGCGGCGacggCAUggaCGcgGGCGCCGUg -3'
miRNA:   3'- -GCCGCCGUa---GUGga-GCaaCCGUGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.