Results 21 - 40 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21234 | 3' | -49.7 | NC_004778.3 | + | 99870 | 0.85 | 0.289327 |
Target: 5'- cGCUGACGCAUGUUUAAAaAUAGCACUc -3' miRNA: 3'- -CGGCUGCGUGCAGAUUUcUAUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 122754 | 0.84 | 0.318931 |
Target: 5'- cGCUGACGCACGUCUA----UAGCACUc -3' miRNA: 3'- -CGGCUGCGUGCAGAUuucuAUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 122692 | 0.84 | 0.318931 |
Target: 5'- cGCUGACGCACGUCUA----UAGCACUc -3' miRNA: 3'- -CGGCUGCGUGCAGAUuucuAUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 99739 | 0.84 | 0.334565 |
Target: 5'- cGCUGGCGCAUGUUUAAAaAUAGCACUc -3' miRNA: 3'- -CGGCUGCGUGCAGAUUUcUAUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 99673 | 0.84 | 0.334565 |
Target: 5'- cGCUGGCGCAUGUUUAAAaAUAGCACUc -3' miRNA: 3'- -CGGCUGCGUGCAGAUUUcUAUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 99436 | 0.82 | 0.402571 |
Target: 5'- cGCUcACGCACGUCUAAAaAUAGCACa -3' miRNA: 3'- -CGGcUGCGUGCAGAUUUcUAUCGUGa -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 122386 | 0.82 | 0.420891 |
Target: 5'- gGUCGGCGC-CGUCUAAAGAUAaCACUa -3' miRNA: 3'- -CGGCUGCGuGCAGAUUUCUAUcGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 67019 | 0.81 | 0.4688 |
Target: 5'- -aCGGCGCcgACGcCUAAAGAUAGCACUc -3' miRNA: 3'- cgGCUGCG--UGCaGAUUUCUAUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 99607 | 0.8 | 0.478716 |
Target: 5'- cGCUGACGCACGUCUAAAaAUAaCACUc -3' miRNA: 3'- -CGGCUGCGUGCAGAUUUcUAUcGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 122802 | 0.79 | 0.561276 |
Target: 5'- cGCUGACGCACGUUUA----UAGCACUc -3' miRNA: 3'- -CGGCUGCGUGCAGAUuucuAUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 24088 | 0.78 | 0.614849 |
Target: 5'- cGCUGACGCACGUCUcAAauUGGCAUUc -3' miRNA: 3'- -CGGCUGCGUGCAGAuUUcuAUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 24287 | 0.78 | 0.614849 |
Target: 5'- cGCUGACGCACGUCUcAAauUGGCAUUc -3' miRNA: 3'- -CGGCUGCGUGCAGAuUUcuAUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 23891 | 0.78 | 0.614849 |
Target: 5'- cGCUGACGCACGUCUcAAauUGGCAUUc -3' miRNA: 3'- -CGGCUGCGUGCAGAuUUcuAUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 24353 | 0.78 | 0.625642 |
Target: 5'- cGCUGACcCAUGUCUAAAaAUAGCACUc -3' miRNA: 3'- -CGGCUGcGUGCAGAUUUcUAUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 45221 | 0.77 | 0.647233 |
Target: 5'- cGCCGcuCGCGCG-CUGAuGGUAGCGCUc -3' miRNA: 3'- -CGGCu-GCGUGCaGAUUuCUAUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 125069 | 0.76 | 0.721854 |
Target: 5'- cGCUGACGCAUGUCUGA----GGUACUc -3' miRNA: 3'- -CGGCUGCGUGCAGAUUucuaUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 124947 | 0.76 | 0.721854 |
Target: 5'- cGCUGACGCAUGUCUGA----GGUACUc -3' miRNA: 3'- -CGGCUGCGUGCAGAUUucuaUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 51139 | 0.76 | 0.721854 |
Target: 5'- cGCCGGCGCGCGgCUGA----AGCACUu -3' miRNA: 3'- -CGGCUGCGUGCaGAUUucuaUCGUGA- -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 36861 | 0.76 | 0.732256 |
Target: 5'- cGCCGGCgguGCGCGUCUu-GGcgAGCGCg -3' miRNA: 3'- -CGGCUG---CGUGCAGAuuUCuaUCGUGa -5' |
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21234 | 3' | -49.7 | NC_004778.3 | + | 23825 | 0.75 | 0.742562 |
Target: 5'- cGCUGACGCAUGUCUcAAauUAGUACUc -3' miRNA: 3'- -CGGCUGCGUGCAGAuUUcuAUCGUGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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