miRNA display CGI


Results 1 - 20 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21234 3' -49.7 NC_004778.3 + 66628 1.11 0.007944
Target:  5'- cGCCGACGCACGUCUAAAGAUAGCACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAUUUCUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 122446 1.06 0.015098
Target:  5'- cGCUGACGCACGUCUAAAGAUAGCACUu -3'
miRNA:   3'- -CGGCUGCGUGCAGAUUUCUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 19884 1.06 0.015098
Target:  5'- cGCUGACGCACGUCUAAAGAUAGCACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAUUUCUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 66693 1.06 0.015098
Target:  5'- cGCUGACGCACGUCUAAAGAUAGCACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAUUUCUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 66758 1.06 0.015098
Target:  5'- cGCUGACGCACGUCUAAAGAUAGCACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAUUUCUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 20015 1.05 0.016963
Target:  5'- cGCCGACGCACGUUUAAAGAUAGCACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAUUUCUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 66890 1.02 0.02944
Target:  5'- cGCCGACGCACGUCcAAAGAUAGCACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGaUUUCUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 20171 1.02 0.02944
Target:  5'- cGCCGACGCACGUCcAAAGAUAGCACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGaUUUCUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 66824 1.02 0.02944
Target:  5'- cGCCGACGCACGUCcAAAGAUAGCACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGaUUUCUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 122867 0.98 0.04942
Target:  5'- cGCCGACGCA-GUCUAAAGAUAGCACUu -3'
miRNA:   3'- -CGGCUGCGUgCAGAUUUCUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 122599 0.94 0.08713
Target:  5'- cGCCGACGCACGUCUAAAGAUAaaACUa -3'
miRNA:   3'- -CGGCUGCGUGCAGAUUUCUAUcgUGA- -5'
21234 3' -49.7 NC_004778.3 + 20049 0.92 0.115082
Target:  5'- cGCCGACGCACGU---AAGAUAGCACUg -3'
miRNA:   3'- -CGGCUGCGUGCAgauUUCUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 99378 0.92 0.119609
Target:  5'- cGCCGACGCACGUCUAAAGAUAaccuuguuuuucgucGUACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAUUUCUAU---------------CGUGA- -5'
21234 3' -49.7 NC_004778.3 + 19949 0.91 0.1216
Target:  5'- cGCUGACGCACGUU-AAAGAUAGCACUu -3'
miRNA:   3'- -CGGCUGCGUGCAGaUUUCUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 66953 0.91 0.135673
Target:  5'- cGCCGACGCACGU---AAGAUAGCACUc -3'
miRNA:   3'- -CGGCUGCGUGCAgauUUCUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 23956 0.9 0.147196
Target:  5'- cGCUGACGCAUGUCUAAAaAUAGCACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAUUUcUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 24154 0.9 0.147196
Target:  5'- cGCUGACGCAUGUCUAAAaAUAGCACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAUUUcUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 99936 0.89 0.172948
Target:  5'- cGCUGGCGCAUGUCUAAAaAUAGCACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAUUUcUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 99267 0.88 0.182389
Target:  5'- cGCUGACGCACGUau-AAGAUAGCGCUc -3'
miRNA:   3'- -CGGCUGCGUGCAgauUUCUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 99804 0.85 0.289327
Target:  5'- cGCUGACGCAUGUUUAAAaAUAGCACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAUUUcUAUCGUGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.