miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21234 3' -49.7 NC_004778.3 + 113887 0.71 0.930428
Target:  5'- gGCCGG-GCGCGUCgggcGAAGGcGGCGCc -3'
miRNA:   3'- -CGGCUgCGUGCAGa---UUUCUaUCGUGa -5'
21234 3' -49.7 NC_004778.3 + 24088 0.78 0.614849
Target:  5'- cGCUGACGCACGUCUcAAauUGGCAUUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAuUUcuAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 24287 0.78 0.614849
Target:  5'- cGCUGACGCACGUCUcAAauUGGCAUUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAuUUcuAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 24353 0.78 0.625642
Target:  5'- cGCUGACcCAUGUCUAAAaAUAGCACUc -3'
miRNA:   3'- -CGGCUGcGUGCAGAUUUcUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 51139 0.76 0.721854
Target:  5'- cGCCGGCGCGCGgCUGA----AGCACUu -3'
miRNA:   3'- -CGGCUGCGUGCaGAUUucuaUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 23825 0.75 0.742562
Target:  5'- cGCUGACGCAUGUCUcAAauUAGUACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAuUUcuAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 24022 0.75 0.742562
Target:  5'- cGCUGACGCAUGUCUcAAauUAGUACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAuUUcuAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 24220 0.75 0.742562
Target:  5'- cGCUGACGCAUGUCUcAAauUAGUACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAuUUcuAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 35981 0.72 0.906532
Target:  5'- uGCCGACgGC-CGUCaacucguuGGGAUGGCACc -3'
miRNA:   3'- -CGGCUG-CGuGCAGau------UUCUAUCGUGa -5'
21234 3' -49.7 NC_004778.3 + 23891 0.78 0.614849
Target:  5'- cGCUGACGCACGUCUcAAauUGGCAUUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAuUUcuAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 99607 0.8 0.478716
Target:  5'- cGCUGACGCACGUCUAAAaAUAaCACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAUUUcUAUcGUGA- -5'
21234 3' -49.7 NC_004778.3 + 99436 0.82 0.402571
Target:  5'- cGCUcACGCACGUCUAAAaAUAGCACa -3'
miRNA:   3'- -CGGcUGCGUGCAGAUUUcUAUCGUGa -5'
21234 3' -49.7 NC_004778.3 + 23956 0.9 0.147196
Target:  5'- cGCUGACGCAUGUCUAAAaAUAGCACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAUUUcUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 24154 0.9 0.147196
Target:  5'- cGCUGACGCAUGUCUAAAaAUAGCACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAUUUcUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 99936 0.89 0.172948
Target:  5'- cGCUGGCGCAUGUCUAAAaAUAGCACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAUUUcUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 99267 0.88 0.182389
Target:  5'- cGCUGACGCACGUau-AAGAUAGCGCUc -3'
miRNA:   3'- -CGGCUGCGUGCAgauUUCUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 99804 0.85 0.289327
Target:  5'- cGCUGACGCAUGUUUAAAaAUAGCACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAUUUcUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 99870 0.85 0.289327
Target:  5'- cGCUGACGCAUGUUUAAAaAUAGCACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAUUUcUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 99673 0.84 0.334565
Target:  5'- cGCUGGCGCAUGUUUAAAaAUAGCACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAUUUcUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 99739 0.84 0.334565
Target:  5'- cGCUGGCGCAUGUUUAAAaAUAGCACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAUUUcUAUCGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.