miRNA display CGI


Results 1 - 20 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21234 3' -49.7 NC_004778.3 + 4431 0.67 0.992823
Target:  5'- gGCCGACGCAauuauuCG-CUucGAAGA-GGCGCg -3'
miRNA:   3'- -CGGCUGCGU------GCaGA--UUUCUaUCGUGa -5'
21234 3' -49.7 NC_004778.3 + 7167 0.69 0.971975
Target:  5'- cGCCGA-GCACuagcUCguuGAGGUGGCGCa -3'
miRNA:   3'- -CGGCUgCGUGc---AGau-UUCUAUCGUGa -5'
21234 3' -49.7 NC_004778.3 + 9701 0.66 0.995372
Target:  5'- gGCCGGCGCGgCGUCguguuccaaaacGGCGCg -3'
miRNA:   3'- -CGGCUGCGU-GCAGauuucua-----UCGUGa -5'
21234 3' -49.7 NC_004778.3 + 14024 0.67 0.99049
Target:  5'- uGUCGAaGCGCa-CUGAAGGUAGUGCUu -3'
miRNA:   3'- -CGGCUgCGUGcaGAUUUCUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 17928 0.7 0.954349
Target:  5'- cGCCGGCGUcaGCuUCUaAGAGAUGcGCGCa -3'
miRNA:   3'- -CGGCUGCG--UGcAGA-UUUCUAU-CGUGa -5'
21234 3' -49.7 NC_004778.3 + 19884 1.06 0.015098
Target:  5'- cGCUGACGCACGUCUAAAGAUAGCACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAUUUCUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 19949 0.91 0.1216
Target:  5'- cGCUGACGCACGUU-AAAGAUAGCACUu -3'
miRNA:   3'- -CGGCUGCGUGCAGaUUUCUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 19975 0.7 0.945565
Target:  5'- cGCCGACcucgcuuuucggGCACGUCUGuacccgaaAAGcgAGUGCUa -3'
miRNA:   3'- -CGGCUG------------CGUGCAGAU--------UUCuaUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 20015 1.05 0.016963
Target:  5'- cGCCGACGCACGUUUAAAGAUAGCACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAUUUCUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 20049 0.92 0.115082
Target:  5'- cGCCGACGCACGU---AAGAUAGCACUg -3'
miRNA:   3'- -CGGCUGCGUGCAgauUUCUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 20105 0.66 0.993712
Target:  5'- cGCUGACGCACGUCacuuguuuuuccAGUACg -3'
miRNA:   3'- -CGGCUGCGUGCAGauuucua-----UCGUGa -5'
21234 3' -49.7 NC_004778.3 + 20171 1.02 0.02944
Target:  5'- cGCCGACGCACGUCcAAAGAUAGCACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGaUUUCUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 21343 0.66 0.99612
Target:  5'- -aCGGCuGCACGUCcgccGGcgAGCACUu -3'
miRNA:   3'- cgGCUG-CGUGCAGauu-UCuaUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 22565 0.67 0.99049
Target:  5'- uGCCGACGCGCccgUAccGcUGGCGCUa -3'
miRNA:   3'- -CGGCUGCGUGcagAUuuCuAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 23758 0.71 0.935738
Target:  5'- cGCCGAUGCuuGcagCUAAAG-UGGCACc -3'
miRNA:   3'- -CGGCUGCGugCa--GAUUUCuAUCGUGa -5'
21234 3' -49.7 NC_004778.3 + 23825 0.75 0.742562
Target:  5'- cGCUGACGCAUGUCUcAAauUAGUACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAuUUcuAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 23891 0.78 0.614849
Target:  5'- cGCUGACGCACGUCUcAAauUGGCAUUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAuUUcuAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 23956 0.9 0.147196
Target:  5'- cGCUGACGCAUGUCUAAAaAUAGCACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAUUUcUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 24022 0.75 0.742562
Target:  5'- cGCUGACGCAUGUCUcAAauUAGUACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAuUUcuAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 24088 0.78 0.614849
Target:  5'- cGCUGACGCACGUCUcAAauUGGCAUUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAuUUcuAUCGUGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.