miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21234 5' -48.8 NC_004778.3 + 43339 0.66 0.998586
Target:  5'- uGGGCGC-CGga-UCGAGAAGC-AGGc -3'
miRNA:   3'- uCUUGCGaGCaugAGCUUUUCGcUCC- -5'
21234 5' -48.8 NC_004778.3 + 80565 0.66 0.998586
Target:  5'- -uGGCGC-CGUACUuugacgCGAucaucAGCGAGGg -3'
miRNA:   3'- ucUUGCGaGCAUGA------GCUuu---UCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 92877 0.66 0.998292
Target:  5'- gAGAACgGCUCGgcguccaGCUUGAGccgcAGCGAGc -3'
miRNA:   3'- -UCUUG-CGAGCa------UGAGCUUu---UCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 110991 0.66 0.998292
Target:  5'- cGAGCGCggccaCGUAgUCGAGcAAGUGAa- -3'
miRNA:   3'- uCUUGCGa----GCAUgAGCUU-UUCGCUcc -5'
21234 5' -48.8 NC_004778.3 + 31413 0.66 0.997948
Target:  5'- cGAACGCaaGUuuCUCGGc--GCGAGGu -3'
miRNA:   3'- uCUUGCGagCAu-GAGCUuuuCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 98847 0.67 0.997547
Target:  5'- cGGAGCGCggcaCGUGCUCGuuGAagaacuguuGCGcGGc -3'
miRNA:   3'- -UCUUGCGa---GCAUGAGCuuUU---------CGCuCC- -5'
21234 5' -48.8 NC_004778.3 + 1633 0.67 0.997547
Target:  5'- --uGCGCUUGcUGCgcugCGGAAAGCGAc- -3'
miRNA:   3'- ucuUGCGAGC-AUGa---GCUUUUCGCUcc -5'
21234 5' -48.8 NC_004778.3 + 67041 0.67 0.997504
Target:  5'- -uGACGC-CGUACUCGAAAaaaaaacGGCGccGa -3'
miRNA:   3'- ucUUGCGaGCAUGAGCUUU-------UCGCucC- -5'
21234 5' -48.8 NC_004778.3 + 122762 0.67 0.997083
Target:  5'- gAGAACaucUGUACUCGAAAAGUGGa- -3'
miRNA:   3'- -UCUUGcgaGCAUGAGCUUUUCGCUcc -5'
21234 5' -48.8 NC_004778.3 + 84454 0.67 0.996549
Target:  5'- -aAGCGCaCGUGCUCGA--AGCGGu- -3'
miRNA:   3'- ucUUGCGaGCAUGAGCUuuUCGCUcc -5'
21234 5' -48.8 NC_004778.3 + 89442 0.67 0.995237
Target:  5'- cGGACGCggaCGUGCuguacgUCGAAAAGCGc-- -3'
miRNA:   3'- uCUUGCGa--GCAUG------AGCUUUUCGCucc -5'
21234 5' -48.8 NC_004778.3 + 114075 0.68 0.991406
Target:  5'- --cGCGCUCGcuCUCcgcGAGCGAGGa -3'
miRNA:   3'- ucuUGCGAGCauGAGcuuUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 122819 0.69 0.98874
Target:  5'- cGAACaucUGUACUUGGAAAGCGGGa -3'
miRNA:   3'- uCUUGcgaGCAUGAGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 66922 0.69 0.987185
Target:  5'- --cGCGUacagaCGUuCUCGAAAAGUGAGGu -3'
miRNA:   3'- ucuUGCGa----GCAuGAGCUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 122628 0.69 0.983586
Target:  5'- cGAccuCGCUUuu-CUCGAAAAGCGAGu -3'
miRNA:   3'- uCUu--GCGAGcauGAGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 122661 0.69 0.981522
Target:  5'- gAGAACaCcCGUuCcCGAAAAGCGAGGu -3'
miRNA:   3'- -UCUUGcGaGCAuGaGCUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 19992 0.7 0.97682
Target:  5'- gGGcACGUcUGUACcCGAAAAGCGAGu -3'
miRNA:   3'- -UCuUGCGaGCAUGaGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 125228 0.7 0.97682
Target:  5'- -uAACaCUCGUACUUGAAAAuCGGGGu -3'
miRNA:   3'- ucUUGcGAGCAUGAGCUUUUcGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 122580 0.7 0.974163
Target:  5'- gGGuACGggUGUuCUCGAAAAGCGAGu -3'
miRNA:   3'- -UCuUGCgaGCAuGAGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 19706 0.7 0.974163
Target:  5'- gGGuACGggUGUuCUCGAAAAGCGAGu -3'
miRNA:   3'- -UCuUGCgaGCAuGAGCUUUUCGCUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.