Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21236 | 3' | -47.5 | NC_004778.3 | + | 49455 | 0.66 | 0.999677 |
Target: 5'- gUCCAAuGAccGCGCcgCGCUgUUCGGc -3' miRNA: 3'- -AGGUUuCUauCGUGa-GCGAaAAGCCc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 20004 | 1.02 | 0.047041 |
Target: 5'- gUUUAAAGAUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -AGGUUUCUAUCGUGAGCGAAAAGCCC- -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 20160 | 1.12 | 0.010828 |
Target: 5'- gUCCAAAGAUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -AGGUUUCUAUCGUGAGCGAAAAGCCC- -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 66879 | 1.12 | 0.010828 |
Target: 5'- gUCCAAAGAUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -AGGUUUCUAUCGUGAGCGAAAAGCCC- -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 95211 | 0.7 | 0.988118 |
Target: 5'- gCCGGAaguagcgccGAUAGUACUCGUUgaggcCGGGg -3' miRNA: 3'- aGGUUU---------CUAUCGUGAGCGAaaa--GCCC- -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 122793 | 0.71 | 0.975476 |
Target: 5'- -aCGuuuAUAGCACUCGCUUUUCGa- -3' miRNA: 3'- agGUuucUAUCGUGAGCGAAAAGCcc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 122743 | 0.72 | 0.955038 |
Target: 5'- gUCU----AUAGCACUCGCUUUUCGa- -3' miRNA: 3'- -AGGuuucUAUCGUGAGCGAAAAGCcc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 19938 | 0.79 | 0.697996 |
Target: 5'- gUUAAAGAUAGCACUUGUUUUUCGa- -3' miRNA: 3'- aGGUUUCUAUCGUGAGCGAAAAGCcc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 122435 | 0.82 | 0.545914 |
Target: 5'- gUCUAAAGAUAGCACUUGUUUUUCa-- -3' miRNA: 3'- -AGGUUUCUAUCGUGAGCGAAAAGccc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 66747 | 0.95 | 0.114119 |
Target: 5'- gUCUAAAGAUAGCACUCGCUUUUCGa- -3' miRNA: 3'- -AGGUUUCUAUCGUGAGCGAAAAGCcc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 66682 | 0.92 | 0.186975 |
Target: 5'- gUCUAAAGAUAGCACUCGCUUUUCa-- -3' miRNA: 3'- -AGGUUUCUAUCGUGAGCGAAAAGccc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 66944 | 0.8 | 0.676371 |
Target: 5'- aCguAAGAUAGCACUCGUUUUUCGc- -3' miRNA: 3'- aGguUUCUAUCGUGAGCGAAAAGCcc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 20040 | 0.66 | 0.999677 |
Target: 5'- aCguAAGAUAGCACU-GCgaggUCGGc -3' miRNA: 3'- aGguUUCUAUCGUGAgCGaaa-AGCCc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 19873 | 0.95 | 0.114119 |
Target: 5'- gUCUAAAGAUAGCACUCGCUUUUCGa- -3' miRNA: 3'- -AGGUUUCUAUCGUGAGCGAAAAGCcc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 124996 | 0.66 | 0.999203 |
Target: 5'- gUCUGA----GGCAUUCGUUUUUCGGa -3' miRNA: 3'- -AGGUUucuaUCGUGAGCGAAAAGCCc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 5745 | 0.8 | 0.676371 |
Target: 5'- gCCAAaagacGGGUGGCGCUCGUcUUUCGGa -3' miRNA: 3'- aGGUU-----UCUAUCGUGAGCGaAAAGCCc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 66617 | 0.95 | 0.114119 |
Target: 5'- gUCUAAAGAUAGCACUCGCUUUUCGa- -3' miRNA: 3'- -AGGUUUCUAUCGUGAGCGAAAAGCcc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 67007 | 1.05 | 0.030369 |
Target: 5'- cCUAAAGAUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- aGGUUUCUAUCGUGAGCGAAAAGCCC- -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 99527 | 0.69 | 0.992144 |
Target: 5'- aUCUuuAGAcguGCGucggcgccgacCUCGCUUUUCGGGc -3' miRNA: 3'- -AGGuuUCUau-CGU-----------GAGCGAAAAGCCC- -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 122681 | 0.72 | 0.955038 |
Target: 5'- gUCU----AUAGCACUCGCUUUUCGa- -3' miRNA: 3'- -AGGuuucUAUCGUGAGCGAAAAGCcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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