miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21236 5' -55.6 NC_004778.3 + 66845 1.06 0.00382
Target:  5'- gUUCUCGAAAAGCGAGGUCGGCGCCGAc -3'
miRNA:   3'- -AAGAGCUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 20070 1.06 0.00382
Target:  5'- gUUCUCGAAAAGCGAGGUCGGCGCCGAc -3'
miRNA:   3'- -AAGAGCUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 66911 1.03 0.006535
Target:  5'- gUUCUCGAAAAGUGAGGUCGGCGCCGAc -3'
miRNA:   3'- -AAGAGCUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 66779 1.02 0.007112
Target:  5'- gUUCUCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- -AAGAGCUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 19970 1.02 0.007112
Target:  5'- gUUCUCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- -AAGAGCUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 66581 0.99 0.012151
Target:  5'- -aCUCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- aaGAGCUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 122399 0.99 0.012151
Target:  5'- -aCUCGAAAAGCGAGGUCGGCGCCGu -3'
miRNA:   3'- aaGAGCUUUUCGCUCCAGCCGCGGCu -5'
21236 5' -55.6 NC_004778.3 + 20192 0.97 0.015218
Target:  5'- gUUCcCGAAAAGCGAGGUCGGCGCCGAc -3'
miRNA:   3'- -AAGaGCUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 99361 0.94 0.024515
Target:  5'- ---cCGAAAAGCGAGGUCGGCGCCGAc -3'
miRNA:   3'- aagaGCUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 66974 0.92 0.032411
Target:  5'- gUUCUUaAAAAGCGAGGUCGGCGCCGAc -3'
miRNA:   3'- -AAGAGcUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 24334 0.91 0.038298
Target:  5'- -aCUCGAAAcGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- aaGAGCUUUuCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 24135 0.91 0.038298
Target:  5'- -aCUCGAAAcGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- aaGAGCUUUuCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 99417 0.91 0.041623
Target:  5'- -aCUCGGAAAGCGAGGUCGGCGCUc- -3'
miRNA:   3'- aaGAGCUUUUCGCUCCAGCCGCGGcu -5'
21236 5' -55.6 NC_004778.3 + 122777 0.91 0.041623
Target:  5'- cUUUUCGAGAaaAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- -AAGAGCUUU--UCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 122892 0.91 0.043995
Target:  5'- -aCUUGGAAAGCGGGGUCGGCGCCa- -3'
miRNA:   3'- aaGAGCUUUUCGCUCCAGCCGCGGcu -5'
21236 5' -55.6 NC_004778.3 + 19901 0.9 0.04523
Target:  5'- ---cCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- aagaGCUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 122709 0.9 0.04523
Target:  5'- ---cCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- aagaGCUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 20122 0.9 0.04523
Target:  5'- ---cCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- aagaGCUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 122561 0.9 0.04523
Target:  5'- ---cCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- aagaGCUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 66710 0.9 0.04523
Target:  5'- ---cCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- aagaGCUUUUCGCUCCAGCCGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.