miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21236 5' -55.6 NC_004778.3 + 99652 0.79 0.229335
Target:  5'- gUUCUCaAAAAGCaGGGUCGGCGCUGGc -3'
miRNA:   3'- -AAGAGcUUUUCGcUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 24267 0.83 0.133861
Target:  5'- -aCUCGaAAAAGCGcGGUCGGCGCUGAc -3'
miRNA:   3'- aaGAGC-UUUUCGCuCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 23938 0.82 0.148665
Target:  5'- -aCUCGAAAcGCGAGG-CGGCGCUGAc -3'
miRNA:   3'- aaGAGCUUUuCGCUCCaGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 122774 0.82 0.156614
Target:  5'- -aCUCGAAAAGUGGaGUCGGCGCUGAc -3'
miRNA:   3'- aaGAGCUUUUCGCUcCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 66459 0.81 0.175467
Target:  5'- gUUCUCGAAAAGCGAgugcuaucuuuagacGugcGUCGGCGCCGAu -3'
miRNA:   3'- -AAGAGCUUUUCGCU---------------C---CAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 122528 0.81 0.176824
Target:  5'- gUUCUCGAAAAGCGAGugcuauagacgugcGUCaGCGCCGAc -3'
miRNA:   3'- -AAGAGCUUUUCGCUC--------------CAGcCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 122590 0.81 0.176824
Target:  5'- gUUCUCGAAAAGCGAGugcuauagacgugcGUCaGCGCCGAc -3'
miRNA:   3'- -AAGAGCUUUUCGCUC--------------CAGcCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 122638 0.81 0.176824
Target:  5'- uUUCUCGAAAAGCGAGugcuauaaacgugcGUCaGCGCCGAc -3'
miRNA:   3'- -AAGAGCUUUUCGCUC--------------CAGcCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 99586 0.81 0.18281
Target:  5'- gUUCUCaAAAAGCaGGGUCGGCGCUGAc -3'
miRNA:   3'- -AAGAGcUUUUCGcUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 24196 0.85 0.094658
Target:  5'- cUCguaccaGAAAAGCGGGGUCGGCGCUGAc -3'
miRNA:   3'- aAGag----CUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 23998 0.85 0.094658
Target:  5'- cUCguaccaGAAAAGCGGGGUCGGCGCUGAc -3'
miRNA:   3'- aAGag----CUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 23801 0.85 0.094658
Target:  5'- cUCguaccaGAAAAGCGGGGUCGGCGCUGAc -3'
miRNA:   3'- aAGag----CUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 24135 0.91 0.038298
Target:  5'- -aCUCGAAAcGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- aaGAGCUUUuCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 24334 0.91 0.038298
Target:  5'- -aCUCGAAAcGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- aaGAGCUUUuCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 99417 0.91 0.041623
Target:  5'- -aCUCGGAAAGCGAGGUCGGCGCUc- -3'
miRNA:   3'- aaGAGCUUUUCGCUCCAGCCGCGGcu -5'
21236 5' -55.6 NC_004778.3 + 122892 0.91 0.043995
Target:  5'- -aCUUGGAAAGCGGGGUCGGCGCCa- -3'
miRNA:   3'- aaGAGCUUUUCGCUCCAGCCGCGGcu -5'
21236 5' -55.6 NC_004778.3 + 23872 0.9 0.047802
Target:  5'- -aCUCGAAAAGCGcGGUCGGCGCUGAc -3'
miRNA:   3'- aaGAGCUUUUCGCuCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 24069 0.9 0.047802
Target:  5'- -aCUCGAAAAGCGcGGUCGGCGCUGAc -3'
miRNA:   3'- aaGAGCUUUUCGCuCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 122977 0.89 0.056403
Target:  5'- ---cCGAAAAGCGGGGUUGGCGCCGAc -3'
miRNA:   3'- aagaGCUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 99483 0.88 0.062952
Target:  5'- -aCUCGAAAAGCaGGGUCGGCGCUGAc -3'
miRNA:   3'- aaGAGCUUUUCGcUCCAGCCGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.