miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21236 5' -55.6 NC_004778.3 + 19716 0.72 0.551564
Target:  5'- gUUCUCGAAAAGCGAGugcuaucuuuagacGUgCGucaGCGCCGAc -3'
miRNA:   3'- -AAGAGCUUUUCGCUC--------------CA-GC---CGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 19835 0.86 0.087294
Target:  5'- ---cCGAAAAGCGAGGUCGGCGCUGc -3'
miRNA:   3'- aagaGCUUUUCGCUCCAGCCGCGGCu -5'
21236 5' -55.6 NC_004778.3 + 19843 0.69 0.713815
Target:  5'- gUCUguaccCGAAAAGCGAgugcuaucuuuaaacGugcGUCGGCGCCGAc -3'
miRNA:   3'- aAGA-----GCUUUUCGCU---------------C---CAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 19901 0.9 0.04523
Target:  5'- ---cCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- aagaGCUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 19970 1.02 0.007112
Target:  5'- gUUCUCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- -AAGAGCUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 19998 0.69 0.708735
Target:  5'- gUCUguaccCGAAAAGCGAgugcuaucuuuGGacgugcgUCGGCGCCGAc -3'
miRNA:   3'- aAGA-----GCUUUUCGCU-----------CC-------AGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 20035 0.77 0.321101
Target:  5'- ----aGAuagcacuGCGAGGUCGGCGCCGAc -3'
miRNA:   3'- aagagCUuuu----CGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 20070 1.06 0.00382
Target:  5'- gUUCUCGAAAAGCGAGGUCGGCGCCGAc -3'
miRNA:   3'- -AAGAGCUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 20122 0.9 0.04523
Target:  5'- ---cCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- aagaGCUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 20192 0.97 0.015218
Target:  5'- gUUCcCGAAAAGCGAGGUCGGCGCCGAc -3'
miRNA:   3'- -AAGaGCUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 21657 0.67 0.81534
Target:  5'- gUUUCGGccGGCGGuGG-CGGCGCCa- -3'
miRNA:   3'- aAGAGCUuuUCGCU-CCaGCCGCGGcu -5'
21236 5' -55.6 NC_004778.3 + 23801 0.85 0.094658
Target:  5'- cUCguaccaGAAAAGCGGGGUCGGCGCUGAc -3'
miRNA:   3'- aAGag----CUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 23872 0.9 0.047802
Target:  5'- -aCUCGAAAAGCGcGGUCGGCGCUGAc -3'
miRNA:   3'- aaGAGCUUUUCGCuCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 23938 0.82 0.148665
Target:  5'- -aCUCGAAAcGCGAGG-CGGCGCUGAc -3'
miRNA:   3'- aaGAGCUUUuCGCUCCaGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 23998 0.85 0.094658
Target:  5'- cUCguaccaGAAAAGCGGGGUCGGCGCUGAc -3'
miRNA:   3'- aAGag----CUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 24069 0.9 0.047802
Target:  5'- -aCUCGAAAAGCGcGGUCGGCGCUGAc -3'
miRNA:   3'- aaGAGCUUUUCGCuCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 24135 0.91 0.038298
Target:  5'- -aCUCGAAAcGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- aaGAGCUUUuCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 24196 0.85 0.094658
Target:  5'- cUCguaccaGAAAAGCGGGGUCGGCGCUGAc -3'
miRNA:   3'- aAGag----CUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 24267 0.83 0.133861
Target:  5'- -aCUCGaAAAAGCGcGGUCGGCGCUGAc -3'
miRNA:   3'- aaGAGC-UUUUCGCuCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 24334 0.91 0.038298
Target:  5'- -aCUCGAAAcGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- aaGAGCUUUuCGCUCCAGCCGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.