miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21258 3' -55.2 NC_004778.3 + 112184 0.66 0.918704
Target:  5'- gUGCGGCccGACccCGACCcgcuguUUCCCGaGCg -3'
miRNA:   3'- -ACGUCG--CUGa-GCUGGuu----AAGGGCgCG- -5'
21258 3' -55.2 NC_004778.3 + 32600 0.67 0.865036
Target:  5'- cGCAGCGGCUgCGccgcauGCUGAUgcagCCGUGCg -3'
miRNA:   3'- aCGUCGCUGA-GC------UGGUUAag--GGCGCG- -5'
21258 3' -55.2 NC_004778.3 + 26989 0.67 0.865036
Target:  5'- cGCAGCGcGCgCGuaggaGCCAugucaaaaCCCGCGCg -3'
miRNA:   3'- aCGUCGC-UGaGC-----UGGUuaa-----GGGCGCG- -5'
21258 3' -55.2 NC_004778.3 + 105645 1.02 0.009123
Target:  5'- aUGC-GCGACUCGACCAAUUCCCGCGCu -3'
miRNA:   3'- -ACGuCGCUGAGCUGGUUAAGGGCGCG- -5'
21258 3' -55.2 NC_004778.3 + 34636 0.66 0.906707
Target:  5'- gGCGGCGuuaaacugguuCUCGACCGcgGUgcgcUCCucgaCGCGCa -3'
miRNA:   3'- aCGUCGCu----------GAGCUGGU--UA----AGG----GCGCG- -5'
21258 3' -55.2 NC_004778.3 + 60720 0.66 0.906707
Target:  5'- -aCAGCGACUaCGugCAuga-CCGCGg -3'
miRNA:   3'- acGUCGCUGA-GCugGUuaagGGCGCg -5'
21258 3' -55.2 NC_004778.3 + 95934 0.66 0.900346
Target:  5'- cGCAGCG---CGGCCGGcgcgcUgCCGCGCg -3'
miRNA:   3'- aCGUCGCugaGCUGGUUa----AgGGCGCG- -5'
21258 3' -55.2 NC_004778.3 + 121779 0.66 0.893746
Target:  5'- cGU-GCG-CUCGGCCGAcggcguggaCCGCGCg -3'
miRNA:   3'- aCGuCGCuGAGCUGGUUaag------GGCGCG- -5'
21258 3' -55.2 NC_004778.3 + 111763 0.67 0.88691
Target:  5'- cGCccauuGCGuACUCGGCgCGcgUaacaCCGCGCg -3'
miRNA:   3'- aCGu----CGC-UGAGCUG-GUuaAg---GGCGCG- -5'
21258 3' -55.2 NC_004778.3 + 121653 0.67 0.871809
Target:  5'- cGCGGCGACgcuaGugCAggacauaAUUCaaGCGCu -3'
miRNA:   3'- aCGUCGCUGag--CugGU-------UAAGggCGCG- -5'
21258 3' -55.2 NC_004778.3 + 77540 0.67 0.87255
Target:  5'- --aAGCGACgCGGCCGGcgCgUGCGCa -3'
miRNA:   3'- acgUCGCUGaGCUGGUUaaGgGCGCG- -5'
21258 3' -55.2 NC_004778.3 + 10424 0.67 0.88691
Target:  5'- uUGCAauGCG-C-CG-CCGG-UCCCGCGCg -3'
miRNA:   3'- -ACGU--CGCuGaGCuGGUUaAGGGCGCG- -5'
21258 3' -55.2 NC_004778.3 + 33001 0.66 0.918704
Target:  5'- uUGCcGCGAUgUCGGCCAcgUaggccagCCGCGUc -3'
miRNA:   3'- -ACGuCGCUG-AGCUGGUuaAg------GGCGCG- -5'
21258 3' -55.2 NC_004778.3 + 127081 0.67 0.87255
Target:  5'- cGCAGCGuggccgaaguGCUCGACUug-UCCagcaugcgGCGCc -3'
miRNA:   3'- aCGUCGC----------UGAGCUGGuuaAGGg-------CGCG- -5'
21258 3' -55.2 NC_004778.3 + 76301 0.66 0.918704
Target:  5'- aGCAGCGACgcucuugaGugCGAagaCCCGUGg -3'
miRNA:   3'- aCGUCGCUGag------CugGUUaa-GGGCGCg -5'
21258 3' -55.2 NC_004778.3 + 33453 0.67 0.889672
Target:  5'- uUGaGGCGGCUauucggCGACCGAcugugcaacgaccucUUCCaCGCGCc -3'
miRNA:   3'- -ACgUCGCUGA------GCUGGUU---------------AAGG-GCGCG- -5'
21258 3' -55.2 NC_004778.3 + 58319 0.67 0.87255
Target:  5'- gGCGGCGGCggCGGCgAcgUCggguggCGCGCu -3'
miRNA:   3'- aCGUCGCUGa-GCUGgUuaAGg-----GCGCG- -5'
21258 3' -55.2 NC_004778.3 + 38218 0.67 0.865036
Target:  5'- cGCAGCGGCauUUGACuCAGgugUuuGCGUg -3'
miRNA:   3'- aCGUCGCUG--AGCUG-GUUaa-GggCGCG- -5'
21258 3' -55.2 NC_004778.3 + 93230 0.66 0.912828
Target:  5'- uUGCAGCG---CGACCAAcgCCUuggcagaaGCGCa -3'
miRNA:   3'- -ACGUCGCugaGCUGGUUaaGGG--------CGCG- -5'
21258 3' -55.2 NC_004778.3 + 119342 0.66 0.906707
Target:  5'- cUGCGuGUGGCUUGGCguGgacgggCCCGUGUa -3'
miRNA:   3'- -ACGU-CGCUGAGCUGguUaa----GGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.