miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21270 3' -46.3 NC_004778.3 + 85638 0.66 0.999909
Target:  5'- gCUUG-GAAACGAGUcGUCUCAaGACAa -3'
miRNA:   3'- aGAGCuUUUUGCUUA-CGGAGU-CUGUc -5'
21270 3' -46.3 NC_004778.3 + 66581 0.66 0.99988
Target:  5'- aCUCGAAAAGCGAG-GUCggcgCuGACGc -3'
miRNA:   3'- aGAGCUUUUUGCUUaCGGa---GuCUGUc -5'
21270 3' -46.3 NC_004778.3 + 125026 0.67 0.999614
Target:  5'- gUUCGGAAAGCGGggucggcgaugacgcAUGUCUgAGGCAu -3'
miRNA:   3'- aGAGCUUUUUGCU---------------UACGGAgUCUGUc -5'
21270 3' -46.3 NC_004778.3 + 122399 0.67 0.999576
Target:  5'- aCUCGAAAAGCGAGgucggcGCCgucuaaAGAUAa -3'
miRNA:   3'- aGAGCUUUUUGCUUa-----CGGag----UCUGUc -5'
21270 3' -46.3 NC_004778.3 + 66844 0.68 0.99939
Target:  5'- uUCUCGAAAAGCGAGgucggcGCCgacgcacguccaaAGAUAGc -3'
miRNA:   3'- -AGAGCUUUUUGCUUa-----CGGag-----------UCUGUC- -5'
21270 3' -46.3 NC_004778.3 + 99771 0.68 0.999333
Target:  5'- --cCGAAAAGCGAGUGUuauuUUUAGACGu -3'
miRNA:   3'- agaGCUUUUUGCUUACG----GAGUCUGUc -5'
21270 3' -46.3 NC_004778.3 + 19969 0.68 0.998746
Target:  5'- uUCUCGAAAAGCGAG-GUCggcgCuGACGc -3'
miRNA:   3'- -AGAGCUUUUUGCUUaCGGa---GuCUGUc -5'
21270 3' -46.3 NC_004778.3 + 66778 0.68 0.998746
Target:  5'- uUCUCGAAAAGCGAG-GUCggcgCuGACGc -3'
miRNA:   3'- -AGAGCUUUUUGCUUaCGGa---GuCUGUc -5'
21270 3' -46.3 NC_004778.3 + 124060 0.69 0.997766
Target:  5'- -aUCGGAGGACGAggcuGUGCCUCuuccGCAa -3'
miRNA:   3'- agAGCUUUUUGCU----UACGGAGuc--UGUc -5'
21270 3' -46.3 NC_004778.3 + 20069 0.69 0.996809
Target:  5'- uUCUCGAAAAGCGAGgucggcGCCgacgcacguaAGAUAGc -3'
miRNA:   3'- -AGAGCUUUUUGCUUa-----CGGag--------UCUGUC- -5'
21270 3' -46.3 NC_004778.3 + 66660 0.7 0.994758
Target:  5'- --cCGAAAAGCGAGUGCUaucuUUGGACGu -3'
miRNA:   3'- agaGCUUUUUGCUUACGG----AGUCUGUc -5'
21270 3' -46.3 NC_004778.3 + 66726 0.7 0.994758
Target:  5'- --cCGAAAAGCGAGUGCUaucuUUGGACGu -3'
miRNA:   3'- agaGCUUUUUGCUUACGG----AGUCUGUc -5'
21270 3' -46.3 NC_004778.3 + 20006 0.7 0.994758
Target:  5'- --cCGAAAAGCGAGUGCUaucuUUGGACGu -3'
miRNA:   3'- agaGCUUUUUGCUUACGG----AGUCUGUc -5'
21270 3' -46.3 NC_004778.3 + 69788 0.7 0.994758
Target:  5'- --cCGAGAGGCGGccGUGCCUCGcGACc- -3'
miRNA:   3'- agaGCUUUUUGCU--UACGGAGU-CUGuc -5'
21270 3' -46.3 NC_004778.3 + 99480 0.7 0.992875
Target:  5'- uUCUCGAAAAACGAGUacauuuaaccccGCUUUuaGGGCAc -3'
miRNA:   3'- -AGAGCUUUUUGCUUA------------CGGAG--UCUGUc -5'
21270 3' -46.3 NC_004778.3 + 122701 0.7 0.992875
Target:  5'- uUCUCGAAAAACaAGUGCUaucuUUAGACu- -3'
miRNA:   3'- -AGAGCUUUUUGcUUACGG----AGUCUGuc -5'
21270 3' -46.3 NC_004778.3 + 99417 0.72 0.983868
Target:  5'- aCUCGGAAAGCGAGgucgGCgCUCAcGCAc -3'
miRNA:   3'- aGAGCUUUUUGCUUa---CG-GAGUcUGUc -5'
21270 3' -46.3 NC_004778.3 + 99434 0.73 0.959818
Target:  5'- uUCUCGAAAAGCGAgcgcuaucuuauacGUGCgUCAGcGCGa -3'
miRNA:   3'- -AGAGCUUUUUGCU--------------UACGgAGUC-UGUc -5'
21270 3' -46.3 NC_004778.3 + 24256 0.74 0.943611
Target:  5'- uUCUCGuAAAGCGAAUGCCaauuUgAGACGu -3'
miRNA:   3'- -AGAGCuUUUUGCUUACGG----AgUCUGUc -5'
21270 3' -46.3 NC_004778.3 + 24058 0.74 0.943611
Target:  5'- uUCUCGuAAAGCGAAUGCCaauuUgAGACGu -3'
miRNA:   3'- -AGAGCuUUUUGCUUACGG----AgUCUGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.