Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21271 | 3' | -58.7 | NC_004778.3 | + | 9428 | 0.66 | 0.764026 |
Target: 5'- uGGCGUGGCGcgcacguuggacacGGCCGucGU-CUCGGCg -3' miRNA: 3'- -UCGCGUCGCa-------------CCGGCuuCAcGAGCUG- -5' |
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21271 | 3' | -58.7 | NC_004778.3 | + | 1829 | 0.66 | 0.750621 |
Target: 5'- cGCGCuGC-UGGCCGcacccaaaccgaAGGUGCcaaCGACg -3' miRNA: 3'- uCGCGuCGcACCGGC------------UUCACGa--GCUG- -5' |
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21271 | 3' | -58.7 | NC_004778.3 | + | 43836 | 0.66 | 0.747721 |
Target: 5'- cGCGCuaauuGCGcGGCCGuccgacgcggcaacAGGUGC-CGGCu -3' miRNA: 3'- uCGCGu----CGCaCCGGC--------------UUCACGaGCUG- -5' |
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21271 | 3' | -58.7 | NC_004778.3 | + | 33447 | 0.66 | 0.744812 |
Target: 5'- cGGCGCgaaaAGCGcGGCCGuccgcacggcggcGUGCUCGcCg -3' miRNA: 3'- -UCGCG----UCGCaCCGGCuu-----------CACGAGCuG- -5' |
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21271 | 3' | -58.7 | NC_004778.3 | + | 27485 | 0.66 | 0.740919 |
Target: 5'- cGUGCcGUG-GGCCGAccacauggccGUGUUCGACg -3' miRNA: 3'- uCGCGuCGCaCCGGCUu---------CACGAGCUG- -5' |
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21271 | 3' | -58.7 | NC_004778.3 | + | 89883 | 0.66 | 0.731122 |
Target: 5'- uGUGCAGCGUGGUgGGcgcaAGcgGCUUGcGCg -3' miRNA: 3'- uCGCGUCGCACCGgCU----UCa-CGAGC-UG- -5' |
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21271 | 3' | -58.7 | NC_004778.3 | + | 17470 | 0.66 | 0.731122 |
Target: 5'- cGCGCAGCcUGGCCauuGUGCcuuuaGACc -3' miRNA: 3'- uCGCGUCGcACCGGcuuCACGag---CUG- -5' |
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21271 | 3' | -58.7 | NC_004778.3 | + | 121656 | 0.67 | 0.701251 |
Target: 5'- uAGCGCGGCGacGCU--AGUGCagGACa -3' miRNA: 3'- -UCGCGUCGCacCGGcuUCACGagCUG- -5' |
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21271 | 3' | -58.7 | NC_004778.3 | + | 5285 | 0.67 | 0.691166 |
Target: 5'- uAGCGCA-CGUcGCgGAcGUGUUCGACc -3' miRNA: 3'- -UCGCGUcGCAcCGgCUuCACGAGCUG- -5' |
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21271 | 3' | -58.7 | NC_004778.3 | + | 29469 | 0.67 | 0.691166 |
Target: 5'- uGGCGaCAGCGUGGC----GUGCacaaauUCGACg -3' miRNA: 3'- -UCGC-GUCGCACCGgcuuCACG------AGCUG- -5' |
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21271 | 3' | -58.7 | NC_004778.3 | + | 2346 | 0.67 | 0.681031 |
Target: 5'- cGCGaCAG-GUGGCCaauGUGCgCGACa -3' miRNA: 3'- uCGC-GUCgCACCGGcuuCACGaGCUG- -5' |
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21271 | 3' | -58.7 | NC_004778.3 | + | 61027 | 0.67 | 0.677982 |
Target: 5'- cGUGCAGCGUuggcGGUCGGuagccaaaucaaacAcGUGCUCGAa -3' miRNA: 3'- uCGCGUCGCA----CCGGCU--------------U-CACGAGCUg -5' |
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21271 | 3' | -58.7 | NC_004778.3 | + | 71510 | 0.67 | 0.670856 |
Target: 5'- cGGCGgaGGCGuUGGCCaGGGUG-UCGGCg -3' miRNA: 3'- -UCGCg-UCGC-ACCGGcUUCACgAGCUG- -5' |
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21271 | 3' | -58.7 | NC_004778.3 | + | 92861 | 0.67 | 0.670856 |
Target: 5'- cGUGCAcGCuucGGCCGAGaacgGCUCGGCg -3' miRNA: 3'- uCGCGU-CGca-CCGGCUUca--CGAGCUG- -5' |
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21271 | 3' | -58.7 | NC_004778.3 | + | 34310 | 0.67 | 0.669836 |
Target: 5'- aAGUGcCGGCGcGuGCUGGAacuggugcagggcGUGCUCGACa -3' miRNA: 3'- -UCGC-GUCGCaC-CGGCUU-------------CACGAGCUG- -5' |
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21271 | 3' | -58.7 | NC_004778.3 | + | 2393 | 0.67 | 0.650418 |
Target: 5'- cGCGCGGU--GGCCGAcGUGCccgcgccCGACg -3' miRNA: 3'- uCGCGUCGcaCCGGCUuCACGa------GCUG- -5' |
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21271 | 3' | -58.7 | NC_004778.3 | + | 61795 | 0.68 | 0.629923 |
Target: 5'- cGCGCGGCGuUGGCgCGcgcuGGcUGCgCGGCg -3' miRNA: 3'- uCGCGUCGC-ACCG-GCu---UC-ACGaGCUG- -5' |
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21271 | 3' | -58.7 | NC_004778.3 | + | 65757 | 0.68 | 0.599211 |
Target: 5'- uGGCGCAGCGa-GCCGGgcGGUGa-CGGCg -3' miRNA: 3'- -UCGCGUCGCacCGGCU--UCACgaGCUG- -5' |
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21271 | 3' | -58.7 | NC_004778.3 | + | 62635 | 0.69 | 0.568717 |
Target: 5'- uGCGCcagaacAGCGUGGUCGAGGcGgUCGGu -3' miRNA: 3'- uCGCG------UCGCACCGGCUUCaCgAGCUg -5' |
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21271 | 3' | -58.7 | NC_004778.3 | + | 118781 | 0.69 | 0.565687 |
Target: 5'- gGGCGCGGCGcGGCCGGcgcgcacaauuacgAG-GCccagCGGCg -3' miRNA: 3'- -UCGCGUCGCaCCGGCU--------------UCaCGa---GCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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