Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21271 | 5' | -50.2 | NC_004778.3 | + | 26540 | 0.66 | 0.994683 |
Target: 5'- gCGCCGGCaAGUAUuucgcuAGCGugGUgcgcacgGCCg -3' miRNA: 3'- gGCGGUCG-UCAUG------UUGCugUAa------UGGa -5' |
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21271 | 5' | -50.2 | NC_004778.3 | + | 35374 | 0.66 | 0.994683 |
Target: 5'- gCCGCagGGCAgGUACGacACGGCGggcGCCa -3' miRNA: 3'- -GGCGg-UCGU-CAUGU--UGCUGUaa-UGGa -5' |
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21271 | 5' | -50.2 | NC_004778.3 | + | 76747 | 0.66 | 0.993818 |
Target: 5'- uCCGCCAGCAGcgaaAAUG-CGgagGCCa -3' miRNA: 3'- -GGCGGUCGUCaug-UUGCuGUaa-UGGa -5' |
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21271 | 5' | -50.2 | NC_004778.3 | + | 99185 | 0.66 | 0.993818 |
Target: 5'- gCGUgAGCGccGCGACG-CGUUGCCg -3' miRNA: 3'- gGCGgUCGUcaUGUUGCuGUAAUGGa -5' |
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21271 | 5' | -50.2 | NC_004778.3 | + | 114432 | 0.66 | 0.993818 |
Target: 5'- gCGgCAGCgacaAGUugAACGACAUcuccGCCa -3' miRNA: 3'- gGCgGUCG----UCAugUUGCUGUAa---UGGa -5' |
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21271 | 5' | -50.2 | NC_004778.3 | + | 83021 | 0.66 | 0.993818 |
Target: 5'- uUGCUAcGCAuGUGCAGCGACAccgUGuCCg -3' miRNA: 3'- gGCGGU-CGU-CAUGUUGCUGUa--AU-GGa -5' |
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21271 | 5' | -50.2 | NC_004778.3 | + | 38899 | 0.66 | 0.992844 |
Target: 5'- -aGCCuGCAGUggaugcGCGGCGGCuccaACCUg -3' miRNA: 3'- ggCGGuCGUCA------UGUUGCUGuaa-UGGA- -5' |
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21271 | 5' | -50.2 | NC_004778.3 | + | 44320 | 0.66 | 0.992844 |
Target: 5'- cCCGCCAGCG--ACgAGCGGC---GCCg -3' miRNA: 3'- -GGCGGUCGUcaUG-UUGCUGuaaUGGa -5' |
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21271 | 5' | -50.2 | NC_004778.3 | + | 75291 | 0.66 | 0.992844 |
Target: 5'- cCCGCCccGGCGGccaacguugACAACGcCAUgGCCa -3' miRNA: 3'- -GGCGG--UCGUCa--------UGUUGCuGUAaUGGa -5' |
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21271 | 5' | -50.2 | NC_004778.3 | + | 48974 | 0.66 | 0.99175 |
Target: 5'- gCUGCCAGCGcacGUACAucACGAacugGCCc -3' miRNA: 3'- -GGCGGUCGU---CAUGU--UGCUguaaUGGa -5' |
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21271 | 5' | -50.2 | NC_004778.3 | + | 85746 | 0.66 | 0.99175 |
Target: 5'- gCGUCAGCGGUcgcACGugG-CGUcGCCg -3' miRNA: 3'- gGCGGUCGUCA---UGUugCuGUAaUGGa -5' |
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21271 | 5' | -50.2 | NC_004778.3 | + | 81774 | 0.66 | 0.99175 |
Target: 5'- gCGCCGGUAgGUGCG-CGGCc-UGCCg -3' miRNA: 3'- gGCGGUCGU-CAUGUuGCUGuaAUGGa -5' |
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21271 | 5' | -50.2 | NC_004778.3 | + | 114935 | 0.66 | 0.990529 |
Target: 5'- -aGCCGGC-GUGCGcaccGCGGCcuUUGCCa -3' miRNA: 3'- ggCGGUCGuCAUGU----UGCUGu-AAUGGa -5' |
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21271 | 5' | -50.2 | NC_004778.3 | + | 57629 | 0.66 | 0.990529 |
Target: 5'- uCCGUCGcGCG--GCAGCGGCAgcUUGCCc -3' miRNA: 3'- -GGCGGU-CGUcaUGUUGCUGU--AAUGGa -5' |
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21271 | 5' | -50.2 | NC_004778.3 | + | 38500 | 0.66 | 0.990529 |
Target: 5'- gCGCUAGCGcGcGCGACGACcgGUUACaCUu -3' miRNA: 3'- gGCGGUCGU-CaUGUUGCUG--UAAUG-GA- -5' |
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21271 | 5' | -50.2 | NC_004778.3 | + | 39763 | 0.67 | 0.98917 |
Target: 5'- cCCGCCggacuguccguGGCGGUcaGCGACGGCGUg---- -3' miRNA: 3'- -GGCGG-----------UCGUCA--UGUUGCUGUAaugga -5' |
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21271 | 5' | -50.2 | NC_004778.3 | + | 11812 | 0.67 | 0.98917 |
Target: 5'- gUCGuCCGGCGGUGuCGAUGAgCAU-ACCg -3' miRNA: 3'- -GGC-GGUCGUCAU-GUUGCU-GUAaUGGa -5' |
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21271 | 5' | -50.2 | NC_004778.3 | + | 34584 | 0.67 | 0.98917 |
Target: 5'- cCCGUguaCAGCAGUACGggcACGccGCGcUGCCg -3' miRNA: 3'- -GGCG---GUCGUCAUGU---UGC--UGUaAUGGa -5' |
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21271 | 5' | -50.2 | NC_004778.3 | + | 31761 | 0.67 | 0.98917 |
Target: 5'- gUCGCCAGCuccaacggguuGUAUAGCGACG--ACUUu -3' miRNA: 3'- -GGCGGUCGu----------CAUGUUGCUGUaaUGGA- -5' |
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21271 | 5' | -50.2 | NC_004778.3 | + | 75905 | 0.67 | 0.987664 |
Target: 5'- gCCGCCAGCgccgaGGaGCG-CGACAUuuugcgaacgUACCa -3' miRNA: 3'- -GGCGGUCG-----UCaUGUuGCUGUA----------AUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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