miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21271 5' -50.2 NC_004778.3 + 26540 0.66 0.994683
Target:  5'- gCGCCGGCaAGUAUuucgcuAGCGugGUgcgcacgGCCg -3'
miRNA:   3'- gGCGGUCG-UCAUG------UUGCugUAa------UGGa -5'
21271 5' -50.2 NC_004778.3 + 35374 0.66 0.994683
Target:  5'- gCCGCagGGCAgGUACGacACGGCGggcGCCa -3'
miRNA:   3'- -GGCGg-UCGU-CAUGU--UGCUGUaa-UGGa -5'
21271 5' -50.2 NC_004778.3 + 76747 0.66 0.993818
Target:  5'- uCCGCCAGCAGcgaaAAUG-CGgagGCCa -3'
miRNA:   3'- -GGCGGUCGUCaug-UUGCuGUaa-UGGa -5'
21271 5' -50.2 NC_004778.3 + 83021 0.66 0.993818
Target:  5'- uUGCUAcGCAuGUGCAGCGACAccgUGuCCg -3'
miRNA:   3'- gGCGGU-CGU-CAUGUUGCUGUa--AU-GGa -5'
21271 5' -50.2 NC_004778.3 + 114432 0.66 0.993818
Target:  5'- gCGgCAGCgacaAGUugAACGACAUcuccGCCa -3'
miRNA:   3'- gGCgGUCG----UCAugUUGCUGUAa---UGGa -5'
21271 5' -50.2 NC_004778.3 + 99185 0.66 0.993818
Target:  5'- gCGUgAGCGccGCGACG-CGUUGCCg -3'
miRNA:   3'- gGCGgUCGUcaUGUUGCuGUAAUGGa -5'
21271 5' -50.2 NC_004778.3 + 38899 0.66 0.992844
Target:  5'- -aGCCuGCAGUggaugcGCGGCGGCuccaACCUg -3'
miRNA:   3'- ggCGGuCGUCA------UGUUGCUGuaa-UGGA- -5'
21271 5' -50.2 NC_004778.3 + 75291 0.66 0.992844
Target:  5'- cCCGCCccGGCGGccaacguugACAACGcCAUgGCCa -3'
miRNA:   3'- -GGCGG--UCGUCa--------UGUUGCuGUAaUGGa -5'
21271 5' -50.2 NC_004778.3 + 44320 0.66 0.992844
Target:  5'- cCCGCCAGCG--ACgAGCGGC---GCCg -3'
miRNA:   3'- -GGCGGUCGUcaUG-UUGCUGuaaUGGa -5'
21271 5' -50.2 NC_004778.3 + 81774 0.66 0.99175
Target:  5'- gCGCCGGUAgGUGCG-CGGCc-UGCCg -3'
miRNA:   3'- gGCGGUCGU-CAUGUuGCUGuaAUGGa -5'
21271 5' -50.2 NC_004778.3 + 48974 0.66 0.99175
Target:  5'- gCUGCCAGCGcacGUACAucACGAacugGCCc -3'
miRNA:   3'- -GGCGGUCGU---CAUGU--UGCUguaaUGGa -5'
21271 5' -50.2 NC_004778.3 + 85746 0.66 0.99175
Target:  5'- gCGUCAGCGGUcgcACGugG-CGUcGCCg -3'
miRNA:   3'- gGCGGUCGUCA---UGUugCuGUAaUGGa -5'
21271 5' -50.2 NC_004778.3 + 38500 0.66 0.990529
Target:  5'- gCGCUAGCGcGcGCGACGACcgGUUACaCUu -3'
miRNA:   3'- gGCGGUCGU-CaUGUUGCUG--UAAUG-GA- -5'
21271 5' -50.2 NC_004778.3 + 57629 0.66 0.990529
Target:  5'- uCCGUCGcGCG--GCAGCGGCAgcUUGCCc -3'
miRNA:   3'- -GGCGGU-CGUcaUGUUGCUGU--AAUGGa -5'
21271 5' -50.2 NC_004778.3 + 114935 0.66 0.990529
Target:  5'- -aGCCGGC-GUGCGcaccGCGGCcuUUGCCa -3'
miRNA:   3'- ggCGGUCGuCAUGU----UGCUGu-AAUGGa -5'
21271 5' -50.2 NC_004778.3 + 39763 0.67 0.98917
Target:  5'- cCCGCCggacuguccguGGCGGUcaGCGACGGCGUg---- -3'
miRNA:   3'- -GGCGG-----------UCGUCA--UGUUGCUGUAaugga -5'
21271 5' -50.2 NC_004778.3 + 11812 0.67 0.98917
Target:  5'- gUCGuCCGGCGGUGuCGAUGAgCAU-ACCg -3'
miRNA:   3'- -GGC-GGUCGUCAU-GUUGCU-GUAaUGGa -5'
21271 5' -50.2 NC_004778.3 + 34584 0.67 0.98917
Target:  5'- cCCGUguaCAGCAGUACGggcACGccGCGcUGCCg -3'
miRNA:   3'- -GGCG---GUCGUCAUGU---UGC--UGUaAUGGa -5'
21271 5' -50.2 NC_004778.3 + 31761 0.67 0.98917
Target:  5'- gUCGCCAGCuccaacggguuGUAUAGCGACG--ACUUu -3'
miRNA:   3'- -GGCGGUCGu----------CAUGUUGCUGUaaUGGA- -5'
21271 5' -50.2 NC_004778.3 + 75905 0.67 0.987664
Target:  5'- gCCGCCAGCgccgaGGaGCG-CGACAUuuugcgaacgUACCa -3'
miRNA:   3'- -GGCGGUCG-----UCaUGUuGCUGUA----------AUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.