Results 21 - 40 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21283 | 3' | -55.4 | NC_004778.3 | + | 66817 | 0.91 | 0.048521 |
Target: 5'- gCGUCGGCGCCGACCUCGCUUUUUa-- -3' miRNA: 3'- -GCAGUCGCGGCUGGAGCGAAAAGccc -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 23961 | 0.91 | 0.051225 |
Target: 5'- gCGUCAGCGCCGACCcCGCUUUUCuGGu -3' miRNA: 3'- -GCAGUCGCGGCUGGaGCGAAAAGcCC- -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 24159 | 0.91 | 0.051225 |
Target: 5'- gCGUCAGCGCCGACCcCGCUUUUCuGGu -3' miRNA: 3'- -GCAGUCGCGGCUGGaGCGAAAAGcCC- -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 24357 | 0.91 | 0.051225 |
Target: 5'- gCGUCAGCGCCGACCcCGCUUUUCuGGu -3' miRNA: 3'- -GCAGUCGCGGCUGGaGCGAAAAGcCC- -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 24027 | 0.91 | 0.052632 |
Target: 5'- gCGUCAGCGCCGACCgCGCUUUUCGa- -3' miRNA: 3'- -GCAGUCGCGGCUGGaGCGAAAAGCcc -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 122462 | 0.91 | 0.052632 |
Target: 5'- gCGUCGGCGCCGACCUUGCUUUUUGa- -3' miRNA: 3'- -GCAGUCGCGGCUGGAGCGAAAAGCcc -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 24225 | 0.91 | 0.052632 |
Target: 5'- gCGUCAGCGCCGACCgCGCUUUUCGa- -3' miRNA: 3'- -GCAGUCGCGGCUGGaGCGAAAAGCcc -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 24489 | 0.91 | 0.054076 |
Target: 5'- gGUCAGCGCCGACCUCGCgUUUCGa- -3' miRNA: 3'- gCAGUCGCGGCUGGAGCGaAAAGCcc -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 123131 | 0.89 | 0.065318 |
Target: 5'- gCGUCGGCGCCaACCcCGCUUUUCGGGu -3' miRNA: 3'- -GCAGUCGCGGcUGGaGCGAAAAGCCC- -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 24424 | 0.88 | 0.076516 |
Target: 5'- gCGUCAGCGCCGACCgCGCUUUUucgaguaCGGGc -3' miRNA: 3'- -GCAGUCGCGGCUGGaGCGAAAA-------GCCC- -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 122246 | 0.88 | 0.076721 |
Target: 5'- --aCGGCGCCGACCUCGCUUUUCGa- -3' miRNA: 3'- gcaGUCGCGGCUGGAGCGAAAAGCcc -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 99639 | 0.88 | 0.083116 |
Target: 5'- gCGUCAGCGCCGACCcUGCUUUUCGa- -3' miRNA: 3'- -GCAGUCGCGGCUGGaGCGAAAAGCcc -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 66754 | 0.87 | 0.090017 |
Target: 5'- gCGUCGGCGCCGACCUCaCUUUUCGa- -3' miRNA: 3'- -GCAGUCGCGGCUGGAGcGAAAAGCcc -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 122186 | 0.86 | 0.114121 |
Target: 5'- aG-CAGCGCCGACCUUGCUUUUCGa- -3' miRNA: 3'- gCaGUCGCGGCUGGAGCGAAAAGCcc -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 99573 | 0.84 | 0.136909 |
Target: 5'- gCGUgAGCGCCGACCUCGCUUUcCGa- -3' miRNA: 3'- -GCAgUCGCGGCUGGAGCGAAAaGCcc -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 99743 | 0.84 | 0.144151 |
Target: 5'- gCGUCAGCGCCGACCcUGCUUUUUGa- -3' miRNA: 3'- -GCAGUCGCGGCUGGaGCGAAAAGCcc -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 67019 | 0.83 | 0.158478 |
Target: 5'- --aCGGCGCCGACgccuaaagauagcaCUCGCUUUUCGGGu -3' miRNA: 3'- gcaGUCGCGGCUG--------------GAGCGAAAAGCCC- -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 66896 | 0.82 | 0.185381 |
Target: 5'- gGUCGGCGCCGAcgcacguCCaaagauagcacUCGCUUUUCGGGu -3' miRNA: 3'- gCAGUCGCGGCU-------GG-----------AGCGAAAAGCCC- -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 20177 | 0.82 | 0.185381 |
Target: 5'- gGUCGGCGCCGAcgcacguCCaaagauagcacUCGCUUUUCGGGu -3' miRNA: 3'- gCAGUCGCGGCU-------GG-----------AGCGAAAAGCCC- -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 66830 | 0.82 | 0.185381 |
Target: 5'- gGUCGGCGCCGAcgcacguCCaaagauagcacUCGCUUUUCGGGu -3' miRNA: 3'- gCAGUCGCGGCU-------GG-----------AGCGAAAAGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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