miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21283 3' -55.4 NC_004778.3 + 125349 0.68 0.818085
Target:  5'- ---gGGCGCCGACCUCGUgaa--GGu -3'
miRNA:   3'- gcagUCGCGGCUGGAGCGaaaagCCc -5'
21283 3' -55.4 NC_004778.3 + 125075 0.73 0.56953
Target:  5'- gGUCGGCGCUGACgcaugucugagguaCUCGUUUUUCGa- -3'
miRNA:   3'- gCAGUCGCGGCUG--------------GAGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 124953 0.73 0.56953
Target:  5'- gGUCGGCGCUGACgcaugucugagguaCUCGUUUUUCGa- -3'
miRNA:   3'- gCAGUCGCGGCUG--------------GAGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 124932 0.82 0.200291
Target:  5'- gCGUCAGCGCCGACCcCGCUUUUg--- -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGAAAAgccc -5'
21283 3' -55.4 NC_004778.3 + 124870 0.71 0.684731
Target:  5'- gCGUCAuCGCCGACCcCGCUUUcCGa- -3'
miRNA:   3'- -GCAGUcGCGGCUGGaGCGAAAaGCcc -5'
21283 3' -55.4 NC_004778.3 + 124810 0.82 0.200291
Target:  5'- gCGUCAGCGCCGACCcCGCUUUUa--- -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGAAAAgccc -5'
21283 3' -55.4 NC_004778.3 + 123131 0.89 0.065318
Target:  5'- gCGUCGGCGCCaACCcCGCUUUUCGGGu -3'
miRNA:   3'- -GCAGUCGCGGcUGGaGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 123050 0.66 0.901188
Target:  5'- uGUUgguGGCGCCGACCcCGCUUUcCa-- -3'
miRNA:   3'- gCAG---UCGCGGCUGGaGCGAAAaGccc -5'
21283 3' -55.4 NC_004778.3 + 122930 0.76 0.402532
Target:  5'- gCGUCAGCGCCGACUcCaCUUUUCGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGcGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 122808 0.77 0.35094
Target:  5'- gGUCGGCGCUGACgcacguuuauagcaCUCGCUUUUCGa- -3'
miRNA:   3'- gCAGUCGCGGCUG--------------GAGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 122760 0.77 0.35094
Target:  5'- gGUCGGCGCUGACgcacgucuauagcaCUCGCUUUUCGa- -3'
miRNA:   3'- gCAGUCGCGGCUG--------------GAGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 122698 0.77 0.35094
Target:  5'- gGUCGGCGCUGACgcacgucuauagcaCUCGCUUUUCGa- -3'
miRNA:   3'- gCAGUCGCGGCUG--------------GAGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 122666 1.1 0.002749
Target:  5'- gCGUCAGCGCCGACCUCGCUUUUCGGGu -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 122618 0.96 0.025884
Target:  5'- gCGUCAGCGCCGACCUCGCUUUUCu-- -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGccc -5'
21283 3' -55.4 NC_004778.3 + 122556 1.1 0.002749
Target:  5'- gCGUCAGCGCCGACCUCGCUUUUCGGGu -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 122498 0.96 0.023836
Target:  5'- ---aAGCGCCGACCUCGCUUUUCGGGa -3'
miRNA:   3'- gcagUCGCGGCUGGAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 122462 0.91 0.052632
Target:  5'- gCGUCGGCGCCGACCUUGCUUUUUGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 122407 1.1 0.002749
Target:  5'- gCGUCAGCGCCGACCUCGCUUUUCGGGu -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 122309 1.1 0.002749
Target:  5'- gCGUCAGCGCCGACCUCGCUUUUCGGGu -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 122246 0.88 0.076721
Target:  5'- --aCGGCGCCGACCUCGCUUUUCGa- -3'
miRNA:   3'- gcaGUCGCGGCUGGAGCGAAAAGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.