miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21283 3' -55.4 NC_004778.3 + 43961 0.66 0.930056
Target:  5'- --gUAGCGCUGAuCCUUGUg---CGGGu -3'
miRNA:   3'- gcaGUCGCGGCU-GGAGCGaaaaGCCC- -5'
21283 3' -55.4 NC_004778.3 + 100073 0.72 0.654193
Target:  5'- gCGcCAGCGUCGACCcUGCUUUUUGa- -3'
miRNA:   3'- -GCaGUCGCGGCUGGaGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 100007 0.72 0.643967
Target:  5'- gCGUCAGCGUCGACCcUGCcUUUUGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGaAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 99515 1.09 0.00353
Target:  5'- gCGUCGGCGCCGACCUCGCUUUUCGGGc -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 90813 0.66 0.907435
Target:  5'- aCG-CAGCGUCGACCgCGCUgacguugaCGGc -3'
miRNA:   3'- -GCaGUCGCGGCUGGaGCGAaaa-----GCCc -5'
21283 3' -55.4 NC_004778.3 + 123050 0.66 0.901188
Target:  5'- uGUUgguGGCGCCGACCcCGCUUUcCa-- -3'
miRNA:   3'- gCAG---UCGCGGCUGGaGCGAAAaGccc -5'
21283 3' -55.4 NC_004778.3 + 114531 0.67 0.881062
Target:  5'- cCGUUgcuacgcaAGgGCCGGCCUCGCccg-CGGc -3'
miRNA:   3'- -GCAG--------UCgCGGCUGGAGCGaaaaGCCc -5'
21283 3' -55.4 NC_004778.3 + 95155 0.67 0.873906
Target:  5'- cCGUCGGCGCaCGGCg-CGCg---CGGa -3'
miRNA:   3'- -GCAGUCGCG-GCUGgaGCGaaaaGCCc -5'
21283 3' -55.4 NC_004778.3 + 66764 0.68 0.854299
Target:  5'- gGUCGGCGCUGACgcaCgucuaaagauagcacUCGCUUUUCGa- -3'
miRNA:   3'- gCAGUCGCGGCUG---G---------------AGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 44159 0.71 0.694835
Target:  5'- gGUCAGCcguuaaauacccGCCGGCCgCGCg--UUGGGc -3'
miRNA:   3'- gCAGUCG------------CGGCUGGaGCGaaaAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 125349 0.68 0.818085
Target:  5'- ---gGGCGCCGACCUCGUgaa--GGu -3'
miRNA:   3'- gcagUCGCGGCUGGAGCGaaaagCCc -5'
21283 3' -55.4 NC_004778.3 + 19890 0.68 0.854299
Target:  5'- gGUCGGCGCUGACgcaCgucuaaagauagcacUCGCUUUUCGa- -3'
miRNA:   3'- gCAGUCGCGGCUG---G---------------AGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 8321 0.66 0.928492
Target:  5'- uG-CAGCuCUGACCUCGUUUUUauuguugcucugaaUGGGg -3'
miRNA:   3'- gCaGUCGcGGCUGGAGCGAAAA--------------GCCC- -5'
21283 3' -55.4 NC_004778.3 + 44474 0.7 0.754038
Target:  5'- uCG-CGGCGCCGcuCgUCGCUgg-CGGGc -3'
miRNA:   3'- -GCaGUCGCGGCu-GgAGCGAaaaGCCC- -5'
21283 3' -55.4 NC_004778.3 + 66633 0.66 0.915786
Target:  5'- -aUCGGCGCCGACgcaCgucuaaagauagcacUCGCUUUUCGa- -3'
miRNA:   3'- gcAGUCGCGGCUG---G---------------AGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 95210 0.67 0.873906
Target:  5'- cCGgaagUAGCGCCGAUaguaCUCGUUgaggcCGGGg -3'
miRNA:   3'- -GCa---GUCGCGGCUG----GAGCGAaaa--GCCC- -5'
21283 3' -55.4 NC_004778.3 + 84214 0.7 0.724796
Target:  5'- uGUCAaacGCGCUGACUaCGCUcgacUCGGGc -3'
miRNA:   3'- gCAGU---CGCGGCUGGaGCGAaa--AGCCC- -5'
21283 3' -55.4 NC_004778.3 + 49070 0.72 0.643967
Target:  5'- ----uGCGCCGACCUCGUguucgagUCGGa -3'
miRNA:   3'- gcaguCGCGGCUGGAGCGaaa----AGCCc -5'
21283 3' -55.4 NC_004778.3 + 49468 0.66 0.911669
Target:  5'- uGUgCGGCGCCGcguccaaugaccgcGCCgCGCUgUUCGGc -3'
miRNA:   3'- gCA-GUCGCGGC--------------UGGaGCGAaAAGCCc -5'
21283 3' -55.4 NC_004778.3 + 54242 0.67 0.881062
Target:  5'- uGUCGGCGCUuuggGACCgcgUCGCUUgcgUCGc- -3'
miRNA:   3'- gCAGUCGCGG----CUGG---AGCGAAa--AGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.