miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21283 5' -45.7 NC_004778.3 + 66911 0.67 0.999537
Target:  5'- gUUCUCGAAAAGUGAGgucgGCg------- -3'
miRNA:   3'- -AAGAGCUUUUCGCUCa---CGauagaaau -5'
21283 5' -45.7 NC_004778.3 + 66581 0.69 0.995732
Target:  5'- -aCUCGAAAAGCGAGgucgGCg--CUg-- -3'
miRNA:   3'- aaGAGCUUUUCGCUCa---CGauaGAaau -5'
21283 5' -45.7 NC_004778.3 + 99417 0.69 0.995732
Target:  5'- -aCUCGGAAAGCGAGgucgGCgcUCa--- -3'
miRNA:   3'- aaGAGCUUUUCGCUCa---CGauAGaaau -5'
21283 5' -45.7 NC_004778.3 + 80659 0.7 0.994957
Target:  5'- -aCUCGAAcAGCGuGUGCcacUCUUUAa -3'
miRNA:   3'- aaGAGCUUuUCGCuCACGau-AGAAAU- -5'
21283 5' -45.7 NC_004778.3 + 66845 0.71 0.985824
Target:  5'- gUUCUCGAAAAGCGAGgucgGCg------- -3'
miRNA:   3'- -AAGAGCUUUUCGCUCa---CGauagaaau -5'
21283 5' -45.7 NC_004778.3 + 20070 0.71 0.985824
Target:  5'- gUUCUCGAAAAGCGAGgucgGCg------- -3'
miRNA:   3'- -AAGAGCUUUUCGCUCa---CGauagaaau -5'
21283 5' -45.7 NC_004778.3 + 99605 0.71 0.981683
Target:  5'- gUUgUCGAAAAGCauGUGCUAUUUUUAg -3'
miRNA:   3'- -AAgAGCUUUUCGcuCACGAUAGAAAU- -5'
21283 5' -45.7 NC_004778.3 + 19766 0.72 0.973559
Target:  5'- cUUUUCGGGcacGAGCGuuaucgaaaaacaAGUGCUAUCUUUAa -3'
miRNA:   3'- -AAGAGCUU---UUCGC-------------UCACGAUAGAAAU- -5'
21283 5' -45.7 NC_004778.3 + 66784 0.73 0.967441
Target:  5'- gUCUguacgCGAAAAaCGAGUGCUAUCUUa- -3'
miRNA:   3'- aAGA-----GCUUUUcGCUCACGAUAGAAau -5'
21283 5' -45.7 NC_004778.3 + 19970 0.73 0.951426
Target:  5'- gUUCUCGAAAAGCGAGgucgGCg--CUg-- -3'
miRNA:   3'- -AAGAGCUUUUCGCUCa---CGauaGAaau -5'
21283 5' -45.7 NC_004778.3 + 66779 0.73 0.951426
Target:  5'- gUUCUCGAAAAGCGAGgucgGCg--CUg-- -3'
miRNA:   3'- -AAGAGCUUUUCGCUCa---CGauaGAaau -5'
21283 5' -45.7 NC_004778.3 + 122399 0.74 0.94672
Target:  5'- -aCUCGAAAAGCGAGgucgGCgccGUCUa-- -3'
miRNA:   3'- aaGAGCUUUUCGCUCa---CGa--UAGAaau -5'
21283 5' -45.7 NC_004778.3 + 122700 0.78 0.782924
Target:  5'- gUUCUCGAAAAaCaAGUGCUAUCUUUAg -3'
miRNA:   3'- -AAGAGCUUUUcGcUCACGAUAGAAAU- -5'
21283 5' -45.7 NC_004778.3 + 99771 0.8 0.684965
Target:  5'- ---cCGAAAAGCGAGUGUUAUUUUUAg -3'
miRNA:   3'- aagaGCUUUUCGCUCACGAUAGAAAU- -5'
21283 5' -45.7 NC_004778.3 + 66855 0.81 0.662273
Target:  5'- ---cCGAAAAGCGAG-GCUAUCUUUAg -3'
miRNA:   3'- aagaGCUUUUCGCUCaCGAUAGAAAU- -5'
21283 5' -45.7 NC_004778.3 + 100101 0.85 0.422013
Target:  5'- ---cCGAAAAGCGAGUGCUAUUUUUAg -3'
miRNA:   3'- aagaGCUUUUCGCUCACGAUAGAAAU- -5'
21283 5' -45.7 NC_004778.3 + 99969 0.85 0.422013
Target:  5'- ---cCGAAAAGCGAGUGCUAUUUUUAa -3'
miRNA:   3'- aagaGCUUUUCGCUCACGAUAGAAAU- -5'
21283 5' -45.7 NC_004778.3 + 99845 0.86 0.412243
Target:  5'- gUCUguaccCGAAAAGCGAGUGCUAUUUUUAa -3'
miRNA:   3'- aAGA-----GCUUUUCGCUCACGAUAGAAAU- -5'
21283 5' -45.7 NC_004778.3 + 100043 0.86 0.412243
Target:  5'- gUCUguaccCGAAAAGCGAGUGCUAUUUUUAa -3'
miRNA:   3'- aAGA-----GCUUUUCGCUCACGAUAGAAAU- -5'
21283 5' -45.7 NC_004778.3 + 99911 0.86 0.412243
Target:  5'- gUCUguaccCGAAAAGCGAGUGCUAUUUUUAa -3'
miRNA:   3'- aAGA-----GCUUUUCGCUCACGAUAGAAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.