Results 1 - 20 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21284 | 5' | -56.7 | NC_004778.3 | + | 19973 | 1.09 | 0.002327 |
Target: 5'- aGCGCCGACCUCGCUUUUCGGGCACGUc -3' miRNA: 3'- -CGCGGCUGGAGCGAAAAGCCCGUGCA- -5' |
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21284 | 5' | -56.7 | NC_004778.3 | + | 19753 | 1.07 | 0.002827 |
Target: 5'- aGCGCCGACCUCGCUUUUCGGGCACGa -3' miRNA: 3'- -CGCGGCUGGAGCGAAAAGCCCGUGCa -5' |
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21284 | 5' | -56.7 | NC_004778.3 | + | 66561 | 1.07 | 0.002827 |
Target: 5'- aGCGCCGACCUCGCUUUUCGGGCACGa -3' miRNA: 3'- -CGCGGCUGGAGCGAAAAGCCCGUGCa -5' |
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21284 | 5' | -56.7 | NC_004778.3 | + | 99510 | 1.07 | 0.002988 |
Target: 5'- gGCGCCGACCUCGCUUUUCGGGCACGa -3' miRNA: 3'- -CGCGGCUGGAGCGAAAAGCCCGUGCa -5' |
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21284 | 5' | -56.7 | NC_004778.3 | + | 122561 | 1.04 | 0.00466 |
Target: 5'- aGCGCCGACCUCGCUUUUCGGGUACGg -3' miRNA: 3'- -CGCGGCUGGAGCGAAAAGCCCGUGCa -5' |
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21284 | 5' | -56.7 | NC_004778.3 | + | 19687 | 1.04 | 0.00466 |
Target: 5'- aGCGCCGACCUCGCUUUUCGGGUACGg -3' miRNA: 3'- -CGCGGCUGGAGCGAAAAGCCCGUGCa -5' |
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21284 | 5' | -56.7 | NC_004778.3 | + | 122671 | 1.04 | 0.00466 |
Target: 5'- aGCGCCGACCUCGCUUUUCGGGUACGg -3' miRNA: 3'- -CGCGGCUGGAGCGAAAAGCCCGUGCa -5' |
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21284 | 5' | -56.7 | NC_004778.3 | + | 122314 | 1.04 | 0.004926 |
Target: 5'- aGCGCCGACCUCGCUUUUCGGGUACGa -3' miRNA: 3'- -CGCGGCUGGAGCGAAAAGCCCGUGCa -5' |
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21284 | 5' | -56.7 | NC_004778.3 | + | 122412 | 1.04 | 0.004926 |
Target: 5'- aGCGCCGACCUCGCUUUUCGGGUACGa -3' miRNA: 3'- -CGCGGCUGGAGCGAAAAGCCCGUGCa -5' |
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21284 | 5' | -56.7 | NC_004778.3 | + | 20039 | 0.96 | 0.016661 |
Target: 5'- gGCGCCGACCUCGCUUUUCGGGaacgaGCGUu -3' miRNA: 3'- -CGCGGCUGGAGCGAAAAGCCCg----UGCA- -5' |
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21284 | 5' | -56.7 | NC_004778.3 | + | 122499 | 0.96 | 0.016661 |
Target: 5'- aGCGCCGACCUCGCUUUUCGGGaACGg -3' miRNA: 3'- -CGCGGCUGGAGCGAAAAGCCCgUGCa -5' |
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21284 | 5' | -56.7 | NC_004778.3 | + | 66430 | 0.92 | 0.034046 |
Target: 5'- aGCGCCGACCUCGCUUUUCGaGUACGa -3' miRNA: 3'- -CGCGGCUGGAGCGAAAAGCcCGUGCa -5' |
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21284 | 5' | -56.7 | NC_004778.3 | + | 122248 | 0.91 | 0.03596 |
Target: 5'- gGCGCCGACCUCGCUUUUCGaGUACGa -3' miRNA: 3'- -CGCGGCUGGAGCGAAAAGCcCGUGCa -5' |
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21284 | 5' | -56.7 | NC_004778.3 | + | 122189 | 0.88 | 0.060248 |
Target: 5'- aGCGCCGACCUUGCUUUUCGaGUACGa -3' miRNA: 3'- -CGCGGCUGGAGCGAAAAGCcCGUGCa -5' |
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21284 | 5' | -56.7 | NC_004778.3 | + | 24352 | 0.85 | 0.090017 |
Target: 5'- aGCGCCGACCcCGCUUUUCuGGUACGa -3' miRNA: 3'- -CGCGGCUGGaGCGAAAAGcCCGUGCa -5' |
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21284 | 5' | -56.7 | NC_004778.3 | + | 23956 | 0.85 | 0.090017 |
Target: 5'- aGCGCCGACCcCGCUUUUCuGGUACGa -3' miRNA: 3'- -CGCGGCUGGaGCGAAAAGcCCGUGCa -5' |
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21284 | 5' | -56.7 | NC_004778.3 | + | 24154 | 0.85 | 0.090017 |
Target: 5'- aGCGCCGACCcCGCUUUUCuGGUACGa -3' miRNA: 3'- -CGCGGCUGGaGCGAAAAGcCCGUGCa -5' |
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21284 | 5' | -56.7 | NC_004778.3 | + | 67017 | 0.85 | 0.094165 |
Target: 5'- gGCGCCGACgccuaaagauagcaCUCGCUUUUCGGGUACa- -3' miRNA: 3'- -CGCGGCUG--------------GAGCGAAAAGCCCGUGca -5' |
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21284 | 5' | -56.7 | NC_004778.3 | + | 24286 | 0.85 | 0.09746 |
Target: 5'- aGCGCCGACCUCGCgUUUCGaGUACGg -3' miRNA: 3'- -CGCGGCUGGAGCGaAAAGCcCGUGCa -5' |
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21284 | 5' | -56.7 | NC_004778.3 | + | 66627 | 0.85 | 0.09746 |
Target: 5'- aGCGCCGACCUCGCUUUUCGaGaACGUc -3' miRNA: 3'- -CGCGGCUGGAGCGAAAAGCcCgUGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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