miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21284 5' -56.7 NC_004778.3 + 112653 0.76 0.337847
Target:  5'- uGCGUC-ACCUUGUUUUUCGGGUACa- -3'
miRNA:   3'- -CGCGGcUGGAGCGAAAAGCCCGUGca -5'
21284 5' -56.7 NC_004778.3 + 122189 0.88 0.060248
Target:  5'- aGCGCCGACCUUGCUUUUCGaGUACGa -3'
miRNA:   3'- -CGCGGCUGGAGCGAAAAGCcCGUGCa -5'
21284 5' -56.7 NC_004778.3 + 19818 0.85 0.09746
Target:  5'- aGCGCCGACCUCGCUUUUCGaGaACGUc -3'
miRNA:   3'- -CGCGGCUGGAGCGAAAAGCcCgUGCA- -5'
21284 5' -56.7 NC_004778.3 + 66627 0.85 0.09746
Target:  5'- aGCGCCGACCUCGCUUUUCGaGaACGUc -3'
miRNA:   3'- -CGCGGCUGGAGCGAAAAGCcCgUGCA- -5'
21284 5' -56.7 NC_004778.3 + 66693 0.84 0.102741
Target:  5'- gGCGCCGACCUCGCUUUUCGaGaACGUc -3'
miRNA:   3'- -CGCGGCUGGAGCGAAAAGCcCgUGCA- -5'
21284 5' -56.7 NC_004778.3 + 19918 0.84 0.11117
Target:  5'- gGCGCCGACCUCGCUUUUCGagaacGCuCGUa -3'
miRNA:   3'- -CGCGGCUGGAGCGAAAAGCc----CGuGCA- -5'
21284 5' -56.7 NC_004778.3 + 122152 0.82 0.151742
Target:  5'- aGCGCCGACCUUGCUUUUCaaGUACGa -3'
miRNA:   3'- -CGCGGCUGGAGCGAAAAGccCGUGCa -5'
21284 5' -56.7 NC_004778.3 + 122623 0.78 0.249577
Target:  5'- aGCGCCGACCUCGCUUUUCucGaaaaGCGa -3'
miRNA:   3'- -CGCGGCUGGAGCGAAAAGccCg---UGCa -5'
21284 5' -56.7 NC_004778.3 + 66822 0.77 0.274521
Target:  5'- gGCGCCGACCUCGCUUUUUaagaacGUAUGUa -3'
miRNA:   3'- -CGCGGCUGGAGCGAAAAGcc----CGUGCA- -5'
21284 5' -56.7 NC_004778.3 + 122248 0.91 0.03596
Target:  5'- gGCGCCGACCUCGCUUUUCGaGUACGa -3'
miRNA:   3'- -CGCGGCUGGAGCGAAAAGCcCGUGCa -5'
21284 5' -56.7 NC_004778.3 + 66430 0.92 0.034046
Target:  5'- aGCGCCGACCUCGCUUUUCGaGUACGa -3'
miRNA:   3'- -CGCGGCUGGAGCGAAAAGCcCGUGCa -5'
21284 5' -56.7 NC_004778.3 + 122499 0.96 0.016661
Target:  5'- aGCGCCGACCUCGCUUUUCGGGaACGg -3'
miRNA:   3'- -CGCGGCUGGAGCGAAAAGCCCgUGCa -5'
21284 5' -56.7 NC_004778.3 + 19753 1.07 0.002827
Target:  5'- aGCGCCGACCUCGCUUUUCGGGCACGa -3'
miRNA:   3'- -CGCGGCUGGAGCGAAAAGCCCGUGCa -5'
21284 5' -56.7 NC_004778.3 + 66561 1.07 0.002827
Target:  5'- aGCGCCGACCUCGCUUUUCGGGCACGa -3'
miRNA:   3'- -CGCGGCUGGAGCGAAAAGCCCGUGCa -5'
21284 5' -56.7 NC_004778.3 + 19687 1.04 0.00466
Target:  5'- aGCGCCGACCUCGCUUUUCGGGUACGg -3'
miRNA:   3'- -CGCGGCUGGAGCGAAAAGCCCGUGCa -5'
21284 5' -56.7 NC_004778.3 + 122561 1.04 0.00466
Target:  5'- aGCGCCGACCUCGCUUUUCGGGUACGg -3'
miRNA:   3'- -CGCGGCUGGAGCGAAAAGCCCGUGCa -5'
21284 5' -56.7 NC_004778.3 + 122671 1.04 0.00466
Target:  5'- aGCGCCGACCUCGCUUUUCGGGUACGg -3'
miRNA:   3'- -CGCGGCUGGAGCGAAAAGCCCGUGCa -5'
21284 5' -56.7 NC_004778.3 + 122314 1.04 0.004926
Target:  5'- aGCGCCGACCUCGCUUUUCGGGUACGa -3'
miRNA:   3'- -CGCGGCUGGAGCGAAAAGCCCGUGCa -5'
21284 5' -56.7 NC_004778.3 + 122412 1.04 0.004926
Target:  5'- aGCGCCGACCUCGCUUUUCGGGUACGa -3'
miRNA:   3'- -CGCGGCUGGAGCGAAAAGCCCGUGCa -5'
21284 5' -56.7 NC_004778.3 + 20039 0.96 0.016661
Target:  5'- gGCGCCGACCUCGCUUUUCGGGaacgaGCGUu -3'
miRNA:   3'- -CGCGGCUGGAGCGAAAAGCCCg----UGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.