miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21284 5' -56.7 NC_004778.3 + 4378 0.7 0.643967
Target:  5'- aCGCCGACCa-GCaucgUCGGGCAgCGg -3'
miRNA:   3'- cGCGGCUGGagCGaaa-AGCCCGU-GCa -5'
21284 5' -56.7 NC_004778.3 + 8648 0.69 0.714876
Target:  5'- cCGCCGACUacgaGCUUgugUUUGGGCACu- -3'
miRNA:   3'- cGCGGCUGGag--CGAA---AAGCCCGUGca -5'
21284 5' -56.7 NC_004778.3 + 9884 0.68 0.763583
Target:  5'- cGCGCCG-CCaaagUGCcgccCGGGCGCGg -3'
miRNA:   3'- -CGCGGCuGGa---GCGaaaaGCCCGUGCa -5'
21284 5' -56.7 NC_004778.3 + 10297 0.66 0.873906
Target:  5'- gGCGCucgCGACUUCGUUgggagCGGGCguuaaggcgaGCGUg -3'
miRNA:   3'- -CGCG---GCUGGAGCGAaaa--GCCCG----------UGCA- -5'
21284 5' -56.7 NC_004778.3 + 12745 0.71 0.613266
Target:  5'- cGCGCCGAUUcCGCUg-UCGGGCGa-- -3'
miRNA:   3'- -CGCGGCUGGaGCGAaaAGCCCGUgca -5'
21284 5' -56.7 NC_004778.3 + 13758 0.69 0.704886
Target:  5'- cGCGgCGcUCUaCGCgguuugUUCGGGCGCGUu -3'
miRNA:   3'- -CGCgGCuGGA-GCGaa----AAGCCCGUGCA- -5'
21284 5' -56.7 NC_004778.3 + 13859 0.67 0.809375
Target:  5'- cGUGCCGAuggaagcacuaCCUucagugCGCUUcgacacaaaUUUGGGCACGUu -3'
miRNA:   3'- -CGCGGCU-----------GGA------GCGAA---------AAGCCCGUGCA- -5'
21284 5' -56.7 NC_004778.3 + 19687 1.04 0.00466
Target:  5'- aGCGCCGACCUCGCUUUUCGGGUACGg -3'
miRNA:   3'- -CGCGGCUGGAGCGAAAAGCCCGUGCa -5'
21284 5' -56.7 NC_004778.3 + 19753 1.07 0.002827
Target:  5'- aGCGCCGACCUCGCUUUUCGGGCACGa -3'
miRNA:   3'- -CGCGGCUGGAGCGAAAAGCCCGUGCa -5'
21284 5' -56.7 NC_004778.3 + 19818 0.85 0.09746
Target:  5'- aGCGCCGACCUCGCUUUUCGaGaACGUc -3'
miRNA:   3'- -CGCGGCUGGAGCGAAAAGCcCgUGCA- -5'
21284 5' -56.7 NC_004778.3 + 19884 0.66 0.843171
Target:  5'- gGCGCCGACCUCGCagugcuaUCuuacGUGCGUc -3'
miRNA:   3'- -CGCGGCUGGAGCGaaa----AGcc--CGUGCA- -5'
21284 5' -56.7 NC_004778.3 + 19918 0.84 0.11117
Target:  5'- gGCGCCGACCUCGCUUUUCGagaacGCuCGUa -3'
miRNA:   3'- -CGCGGCUGGAGCGAAAAGCc----CGuGCA- -5'
21284 5' -56.7 NC_004778.3 + 19973 1.09 0.002327
Target:  5'- aGCGCCGACCUCGCUUUUCGGGCACGUc -3'
miRNA:   3'- -CGCGGCUGGAGCGAAAAGCCCGUGCA- -5'
21284 5' -56.7 NC_004778.3 + 20017 0.76 0.356435
Target:  5'- gGCGCCGACgcaCguuuaaagauagcacUCGCUUUUCGGGUACa- -3'
miRNA:   3'- -CGCGGCUG---G---------------AGCGAAAAGCCCGUGca -5'
21284 5' -56.7 NC_004778.3 + 20039 0.96 0.016661
Target:  5'- gGCGCCGACCUCGCUUUUCGGGaacgaGCGUu -3'
miRNA:   3'- -CGCGGCUGGAGCGAAAAGCCCg----UGCA- -5'
21284 5' -56.7 NC_004778.3 + 20173 0.76 0.352504
Target:  5'- gGCGCCGAcgcacguCCaaagauagcacUCGCUUUUCGGGUACa- -3'
miRNA:   3'- -CGCGGCU-------GG-----------AGCGAAAAGCCCGUGca -5'
21284 5' -56.7 NC_004778.3 + 22459 0.66 0.851159
Target:  5'- -gGCCaGACCaugUCGUUgguggCGGGCGCGc -3'
miRNA:   3'- cgCGG-CUGG---AGCGAaaa--GCCCGUGCa -5'
21284 5' -56.7 NC_004778.3 + 23956 0.85 0.090017
Target:  5'- aGCGCCGACCcCGCUUUUCuGGUACGa -3'
miRNA:   3'- -CGCGGCUGGaGCGAAAAGcCCGUGCa -5'
21284 5' -56.7 NC_004778.3 + 24022 0.83 0.120244
Target:  5'- aGCGCCGACCgCGCUUUUCGaGUACGg -3'
miRNA:   3'- -CGCGGCUGGaGCGAAAAGCcCGUGCa -5'
21284 5' -56.7 NC_004778.3 + 24088 0.85 0.09746
Target:  5'- aGCGCCGACCUCGCgUUUCGaGUACGg -3'
miRNA:   3'- -CGCGGCUGGAGCGaAAAGCcCGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.