miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21319 3' -45.8 NC_004778.3 + 122276 0.66 0.999883
Target:  5'- uGUUgUUGAAAAaCaAGUGCUAUCUUUa -3'
miRNA:   3'- -CAAgAGCUUUUcGcUCACGAUAGAAA- -5'
21319 3' -45.8 NC_004778.3 + 80659 0.66 0.999799
Target:  5'- --aCUCGAAcAGCGuGUGCcacUCUUUa -3'
miRNA:   3'- caaGAGCUUuUCGCuCACGau-AGAAA- -5'
21319 3' -45.8 NC_004778.3 + 24390 0.68 0.99842
Target:  5'- cGUUCUCGuAAAGCGAGUaCUAa---- -3'
miRNA:   3'- -CAAGAGCuUUUCGCUCAcGAUagaaa -5'
21319 3' -45.8 NC_004778.3 + 24192 0.68 0.99842
Target:  5'- cGUUCUCGuAAAGCGAGUaCUAa---- -3'
miRNA:   3'- -CAAGAGCuUUUCGCUCAcGAUagaaa -5'
21319 3' -45.8 NC_004778.3 + 23994 0.68 0.99842
Target:  5'- cGUUCUCGuAAAGCGAGUaCUAa---- -3'
miRNA:   3'- -CAAGAGCuUUUCGCUCAcGAUagaaa -5'
21319 3' -45.8 NC_004778.3 + 99417 0.69 0.996662
Target:  5'- --aCUCGGAAAGCGAGgucgGCgcUCa-- -3'
miRNA:   3'- caaGAGCUUUUCGCUCa---CGauAGaaa -5'
21319 3' -45.8 NC_004778.3 + 66581 0.69 0.996662
Target:  5'- --aCUCGAAAAGCGAGgucgGCg--CUg- -3'
miRNA:   3'- caaGAGCUUUUCGCUCa---CGauaGAaa -5'
21319 3' -45.8 NC_004778.3 + 122652 0.7 0.995307
Target:  5'- cGUUCcCGAAAAGCGAGgucgGCg--CUUUu -3'
miRNA:   3'- -CAAGaGCUUUUCGCUCa---CGauaGAAA- -5'
21319 3' -45.8 NC_004778.3 + 19766 0.7 0.993433
Target:  5'- cUUUUCGGGcacGAGCGuuaucgaaaaacaAGUGCUAUCUUUa -3'
miRNA:   3'- cAAGAGCUU---UUCGC-------------UCACGAUAGAAA- -5'
21319 3' -45.8 NC_004778.3 + 66912 0.72 0.980551
Target:  5'- cGUUCUCGAAAAGUGAGgucgGCg------ -3'
miRNA:   3'- -CAAGAGCUUUUCGCUCa---CGauagaaa -5'
21319 3' -45.8 NC_004778.3 + 66784 0.72 0.972459
Target:  5'- -gUCUguacgCGAAAAaCGAGUGCUAUCUUa -3'
miRNA:   3'- caAGA-----GCUUUUcGCUCACGAUAGAAa -5'
21319 3' -45.8 NC_004778.3 + 99606 0.73 0.969288
Target:  5'- uGUUgUCGAAAAGCauGUGCUAUUUUUa -3'
miRNA:   3'- -CAAgAGCUUUUCGcuCACGAUAGAAA- -5'
21319 3' -45.8 NC_004778.3 + 122399 0.74 0.954004
Target:  5'- --aCUCGAAAAGCGAGgucgGCgccGUCUa- -3'
miRNA:   3'- caaGAGCUUUUCGCUCa---CGa--UAGAaa -5'
21319 3' -45.8 NC_004778.3 + 66846 0.76 0.888535
Target:  5'- cGUUCUCGAAAAGCGAGgucgGCg------ -3'
miRNA:   3'- -CAAGAGCUUUUCGCUCa---CGauagaaa -5'
21319 3' -45.8 NC_004778.3 + 20071 0.76 0.888535
Target:  5'- cGUUCUCGAAAAGCGAGgucgGCg------ -3'
miRNA:   3'- -CAAGAGCUUUUCGCUCa---CGauagaaa -5'
21319 3' -45.8 NC_004778.3 + 99771 0.77 0.847529
Target:  5'- ----cCGAAAAGCGAGUGUUAUUUUUa -3'
miRNA:   3'- caagaGCUUUUCGCUCACGAUAGAAA- -5'
21319 3' -45.8 NC_004778.3 + 66855 0.77 0.829391
Target:  5'- ----cCGAAAAGCGAG-GCUAUCUUUa -3'
miRNA:   3'- caagaGCUUUUCGCUCaCGAUAGAAA- -5'
21319 3' -45.8 NC_004778.3 + 66780 0.78 0.790562
Target:  5'- cGUUCUCGAAAAGCGAGgucgGCg--CUg- -3'
miRNA:   3'- -CAAGAGCUUUUCGCUCa---CGauaGAaa -5'
21319 3' -45.8 NC_004778.3 + 19971 0.78 0.790562
Target:  5'- cGUUCUCGAAAAGCGAGgucgGCg--CUg- -3'
miRNA:   3'- -CAAGAGCUUUUCGCUCa---CGauaGAaa -5'
21319 3' -45.8 NC_004778.3 + 122699 0.79 0.738186
Target:  5'- uGUUCUCGAAAAaCaAGUGCUAUCUUUa -3'
miRNA:   3'- -CAAGAGCUUUUcGcUCACGAUAGAAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.