Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21319 | 3' | -45.8 | NC_004778.3 | + | 122699 | 0.79 | 0.738186 |
Target: 5'- uGUUCUCGAAAAaCaAGUGCUAUCUUUa -3' miRNA: 3'- -CAAGAGCUUUUcGcUCACGAUAGAAA- -5' |
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21319 | 3' | -45.8 | NC_004778.3 | + | 122652 | 0.7 | 0.995307 |
Target: 5'- cGUUCcCGAAAAGCGAGgucgGCg--CUUUu -3' miRNA: 3'- -CAAGaGCUUUUCGCUCa---CGauaGAAA- -5' |
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21319 | 3' | -45.8 | NC_004778.3 | + | 122638 | 0.91 | 0.243019 |
Target: 5'- uUUCUCGAAAAGCGAGUGCUAUa--- -3' miRNA: 3'- cAAGAGCUUUUCGCUCACGAUAgaaa -5' |
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21319 | 3' | -45.8 | NC_004778.3 | + | 122589 | 0.94 | 0.160861 |
Target: 5'- uGUUCUCGAAAAGCGAGUGCUAUa--- -3' miRNA: 3'- -CAAGAGCUUUUCGCUCACGAUAgaaa -5' |
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21319 | 3' | -45.8 | NC_004778.3 | + | 122527 | 0.94 | 0.160861 |
Target: 5'- uGUUCUCGAAAAGCGAGUGCUAUa--- -3' miRNA: 3'- -CAAGAGCUUUUCGCUCACGAUAgaaa -5' |
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21319 | 3' | -45.8 | NC_004778.3 | + | 122399 | 0.74 | 0.954004 |
Target: 5'- --aCUCGAAAAGCGAGgucgGCgccGUCUa- -3' miRNA: 3'- caaGAGCUUUUCGCUCa---CGa--UAGAaa -5' |
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21319 | 3' | -45.8 | NC_004778.3 | + | 122276 | 0.66 | 0.999883 |
Target: 5'- uGUUgUUGAAAAaCaAGUGCUAUCUUUa -3' miRNA: 3'- -CAAgAGCUUUUcGcUCACGAUAGAAA- -5' |
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21319 | 3' | -45.8 | NC_004778.3 | + | 100101 | 0.82 | 0.592541 |
Target: 5'- ----cCGAAAAGCGAGUGCUAUUUUUa -3' miRNA: 3'- caagaGCUUUUCGCUCACGAUAGAAA- -5' |
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21319 | 3' | -45.8 | NC_004778.3 | + | 100043 | 0.82 | 0.581289 |
Target: 5'- -gUCUguaccCGAAAAGCGAGUGCUAUUUUUa -3' miRNA: 3'- caAGA-----GCUUUUCGCUCACGAUAGAAA- -5' |
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21319 | 3' | -45.8 | NC_004778.3 | + | 99978 | 0.83 | 0.536814 |
Target: 5'- cGUUUguaccCGAAAAGCGAGUGCUAUUUUUa -3' miRNA: 3'- -CAAGa----GCUUUUCGCUCACGAUAGAAA- -5' |
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21319 | 3' | -45.8 | NC_004778.3 | + | 99911 | 0.82 | 0.581289 |
Target: 5'- -gUCUguaccCGAAAAGCGAGUGCUAUUUUUa -3' miRNA: 3'- caAGA-----GCUUUUCGCUCACGAUAGAAA- -5' |
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21319 | 3' | -45.8 | NC_004778.3 | + | 99845 | 0.82 | 0.581289 |
Target: 5'- -gUCUguaccCGAAAAGCGAGUGCUAUUUUUa -3' miRNA: 3'- caAGA-----GCUUUUCGCUCACGAUAGAAA- -5' |
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21319 | 3' | -45.8 | NC_004778.3 | + | 99771 | 0.77 | 0.847529 |
Target: 5'- ----cCGAAAAGCGAGUGUUAUUUUUa -3' miRNA: 3'- caagaGCUUUUCGCUCACGAUAGAAA- -5' |
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21319 | 3' | -45.8 | NC_004778.3 | + | 99606 | 0.73 | 0.969288 |
Target: 5'- uGUUgUCGAAAAGCauGUGCUAUUUUUa -3' miRNA: 3'- -CAAgAGCUUUUCGcuCACGAUAGAAA- -5' |
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21319 | 3' | -45.8 | NC_004778.3 | + | 99436 | 0.96 | 0.124453 |
Target: 5'- cGUUCUCGAAAAGCGAGcGCUAUCUUa -3' miRNA: 3'- -CAAGAGCUUUUCGCUCaCGAUAGAAa -5' |
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21319 | 3' | -45.8 | NC_004778.3 | + | 99417 | 0.69 | 0.996662 |
Target: 5'- --aCUCGGAAAGCGAGgucgGCgcUCa-- -3' miRNA: 3'- caaGAGCUUUUCGCUCa---CGauAGaaa -5' |
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21319 | 3' | -45.8 | NC_004778.3 | + | 80659 | 0.66 | 0.999799 |
Target: 5'- --aCUCGAAcAGCGuGUGCcacUCUUUa -3' miRNA: 3'- caaGAGCUUuUCGCuCACGau-AGAAA- -5' |
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21319 | 3' | -45.8 | NC_004778.3 | + | 66912 | 0.72 | 0.980551 |
Target: 5'- cGUUCUCGAAAAGUGAGgucgGCg------ -3' miRNA: 3'- -CAAGAGCUUUUCGCUCa---CGauagaaa -5' |
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21319 | 3' | -45.8 | NC_004778.3 | + | 66855 | 0.77 | 0.829391 |
Target: 5'- ----cCGAAAAGCGAG-GCUAUCUUUa -3' miRNA: 3'- caagaGCUUUUCGCUCaCGAUAGAAA- -5' |
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21319 | 3' | -45.8 | NC_004778.3 | + | 66846 | 0.76 | 0.888535 |
Target: 5'- cGUUCUCGAAAAGCGAGgucgGCg------ -3' miRNA: 3'- -CAAGAGCUUUUCGCUCa---CGauagaaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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