miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21336 3' -64.8 NC_004778.3 + 57104 0.66 0.504805
Target:  5'- cGCGCacuccaacuuuaCGGCgGUGCUGgGCC-CCGacGGa -3'
miRNA:   3'- -CGCG------------GCCGgCGCGACgCGGaGGCa-CC- -5'
21336 3' -64.8 NC_004778.3 + 53286 0.66 0.504805
Target:  5'- aCGCCGGCgGCgguuGCUGUGgCggcgguugCUGUGGc -3'
miRNA:   3'- cGCGGCCGgCG----CGACGCgGa-------GGCACC- -5'
21336 3' -64.8 NC_004778.3 + 124086 0.66 0.504805
Target:  5'- cGCGCUGaugCGCGCgguugGCgGCCUCCGUu- -3'
miRNA:   3'- -CGCGGCcg-GCGCGa----CG-CGGAGGCAcc -5'
21336 3' -64.8 NC_004778.3 + 57764 0.66 0.504805
Target:  5'- aCGCCcGCCGCGCcaaGCGCCacacguauUCCGa-- -3'
miRNA:   3'- cGCGGcCGGCGCGa--CGCGG--------AGGCacc -5'
21336 3' -64.8 NC_004778.3 + 45137 0.66 0.504805
Target:  5'- aGCGacCCGGCCGCGCgaaaUGCGCUggaUCgCGa-- -3'
miRNA:   3'- -CGC--GGCCGGCGCG----ACGCGG---AG-GCacc -5'
21336 3' -64.8 NC_004778.3 + 115091 0.66 0.49569
Target:  5'- -gGCaaaGGCCGCGgUGCGCacgCCGg-- -3'
miRNA:   3'- cgCGg--CCGGCGCgACGCGga-GGCacc -5'
21336 3' -64.8 NC_004778.3 + 61633 0.66 0.49569
Target:  5'- gGCGCCGcGCagccaGCGC-GCGCCaacgCCGcgcgcaugcUGGg -3'
miRNA:   3'- -CGCGGC-CGg----CGCGaCGCGGa---GGC---------ACC- -5'
21336 3' -64.8 NC_004778.3 + 60402 0.66 0.494782
Target:  5'- aGCGUguuucugCGGCUGCGCuUGCGCUUCaggccgauCGUGc -3'
miRNA:   3'- -CGCG-------GCCGGCGCG-ACGCGGAG--------GCACc -5'
21336 3' -64.8 NC_004778.3 + 121677 0.66 0.48665
Target:  5'- cCGCaucGCUGCGCgUGCGCUUCaCGUGc -3'
miRNA:   3'- cGCGgc-CGGCGCG-ACGCGGAG-GCACc -5'
21336 3' -64.8 NC_004778.3 + 111699 0.66 0.477689
Target:  5'- -gGCCGaGCUGUugcaGCgucgGCGCCUCCGa-- -3'
miRNA:   3'- cgCGGC-CGGCG----CGa---CGCGGAGGCacc -5'
21336 3' -64.8 NC_004778.3 + 57948 0.66 0.477689
Target:  5'- cGCGCgCGcCUGCGCUGCGCUggcugcaaagCCaUGGc -3'
miRNA:   3'- -CGCG-GCcGGCGCGACGCGGa---------GGcACC- -5'
21336 3' -64.8 NC_004778.3 + 93003 0.66 0.472351
Target:  5'- cCGCCGGCCGCGUgaacGCGCagcagccccaaCgcaggaucacauucaUUCGUGGa -3'
miRNA:   3'- cGCGGCCGGCGCGa---CGCG-----------G---------------AGGCACC- -5'
21336 3' -64.8 NC_004778.3 + 121514 0.66 0.467927
Target:  5'- aGCGUC-GCCGCGCUaaaggugagguaaGCGCCgCCGg-- -3'
miRNA:   3'- -CGCGGcCGGCGCGA-------------CGCGGaGGCacc -5'
21336 3' -64.8 NC_004778.3 + 21652 0.67 0.460016
Target:  5'- -gGCCGGCgGUgGCgGCGCCaUCCGg-- -3'
miRNA:   3'- cgCGGCCGgCG-CGaCGCGG-AGGCacc -5'
21336 3' -64.8 NC_004778.3 + 124310 0.67 0.451311
Target:  5'- gGCGCCGGCgUGgGCacgGCGUCUuCCGg-- -3'
miRNA:   3'- -CGCGGCCG-GCgCGa--CGCGGA-GGCacc -5'
21336 3' -64.8 NC_004778.3 + 91378 0.67 0.442697
Target:  5'- cGCaGUCGGCUGaGCUGUGCCUCUu--- -3'
miRNA:   3'- -CG-CGGCCGGCgCGACGCGGAGGcacc -5'
21336 3' -64.8 NC_004778.3 + 41211 0.67 0.442697
Target:  5'- cGCGCUGGaCgCGCGaCUGCGag-CgGUGGa -3'
miRNA:   3'- -CGCGGCC-G-GCGC-GACGCggaGgCACC- -5'
21336 3' -64.8 NC_004778.3 + 95099 0.67 0.442697
Target:  5'- cGUGCgCGGCCG-GCaaaacgGCGUUUCgGUGGc -3'
miRNA:   3'- -CGCG-GCCGGCgCGa-----CGCGGAGgCACC- -5'
21336 3' -64.8 NC_004778.3 + 27527 0.67 0.442697
Target:  5'- cGgGCUGGCCGacaCGUUGCGCUUggacugggcuaCCGUGc -3'
miRNA:   3'- -CgCGGCCGGC---GCGACGCGGA-----------GGCACc -5'
21336 3' -64.8 NC_004778.3 + 111756 0.67 0.434176
Target:  5'- uGCGUacuCGGCgCGCGUaacaccgcGCGCCgUCCGUGa -3'
miRNA:   3'- -CGCG---GCCG-GCGCGa-------CGCGG-AGGCACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.