miRNA display CGI


Results 1 - 20 of 27 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21337 3' -52.1 NC_004778.3 + 89903 0.66 0.978121
Target:  5'- aGCGGCuUGCgcgCGuUGUUGUAaaaaugcuGCAGUg -3'
miRNA:   3'- gCGUCGcACGaa-GC-ACAACAU--------CGUCG- -5'
21337 3' -52.1 NC_004778.3 + 60337 0.66 0.972857
Target:  5'- aGCGGCGUGCcgUUGcaaaagGUGGCGcGCu -3'
miRNA:   3'- gCGUCGCACGa-AGCacaa--CAUCGU-CG- -5'
21337 3' -52.1 NC_004778.3 + 34180 0.66 0.969907
Target:  5'- gCGCAGCaUGCaggaCGUGcUGUGGCuGUu -3'
miRNA:   3'- -GCGUCGcACGaa--GCACaACAUCGuCG- -5'
21337 3' -52.1 NC_004778.3 + 16686 0.66 0.966734
Target:  5'- gCGCugugAGCGUGCUUUGUGcuaUUGgAGCcuauuGCg -3'
miRNA:   3'- -GCG----UCGCACGAAGCAC---AACaUCGu----CG- -5'
21337 3' -52.1 NC_004778.3 + 53161 0.66 0.963332
Target:  5'- gGCGGCGguUGCUguggCGgcgGUUGcGGCGGg -3'
miRNA:   3'- gCGUCGC--ACGAa---GCa--CAACaUCGUCg -5'
21337 3' -52.1 NC_004778.3 + 105641 0.67 0.95169
Target:  5'- aGC-GCGUGCUUgGUGggGUAcuuGguGUa -3'
miRNA:   3'- gCGuCGCACGAAgCACaaCAU---CguCG- -5'
21337 3' -52.1 NC_004778.3 + 124374 0.67 0.95169
Target:  5'- gGCGGCG-GCUgacggggGUGUUGgcguuaauuUGGCGGCu -3'
miRNA:   3'- gCGUCGCaCGAag-----CACAAC---------AUCGUCG- -5'
21337 3' -52.1 NC_004778.3 + 112446 0.67 0.95169
Target:  5'- cCGCAGCGUGUaaUCGauaagGaUGU-GCGGCa -3'
miRNA:   3'- -GCGUCGCACGa-AGCa----CaACAuCGUCG- -5'
21337 3' -52.1 NC_004778.3 + 38256 0.67 0.949095
Target:  5'- gGaCGGCGUGCgcgcuagCGUGcUGUugcgcgucgcgccgcAGCGGCa -3'
miRNA:   3'- gC-GUCGCACGaa-----GCACaACA---------------UCGUCG- -5'
21337 3' -52.1 NC_004778.3 + 82596 0.67 0.947315
Target:  5'- -uUAGCGUGUa--GUGUUGgaugaGGCGGCg -3'
miRNA:   3'- gcGUCGCACGaagCACAACa----UCGUCG- -5'
21337 3' -52.1 NC_004778.3 + 104005 0.67 0.947315
Target:  5'- cCGUGGCGUGUgggugUUCGgcaaggaGUUGgugaAGCGGCa -3'
miRNA:   3'- -GCGUCGCACG-----AAGCa------CAACa---UCGUCG- -5'
21337 3' -52.1 NC_004778.3 + 41252 0.68 0.9378
Target:  5'- aGCuGCGUGCUgcacaaaugcgUCGUGguggUGUugGGCAccGCg -3'
miRNA:   3'- gCGuCGCACGA-----------AGCACa---ACA--UCGU--CG- -5'
21337 3' -52.1 NC_004778.3 + 121701 0.68 0.9378
Target:  5'- gGcCGGCGUGgg-CGUGUUGcuggccGGCGGCg -3'
miRNA:   3'- gC-GUCGCACgaaGCACAACa-----UCGUCG- -5'
21337 3' -52.1 NC_004778.3 + 115214 0.68 0.932655
Target:  5'- aCuaAGCGaUGCUuucgCGUGUUGUgccaaagugauuAGCGGCu -3'
miRNA:   3'- -GcgUCGC-ACGAa---GCACAACA------------UCGUCG- -5'
21337 3' -52.1 NC_004778.3 + 103132 0.68 0.932655
Target:  5'- aGCAGU-UGC-UCGUGUgc-GGCGGCg -3'
miRNA:   3'- gCGUCGcACGaAGCACAacaUCGUCG- -5'
21337 3' -52.1 NC_004778.3 + 100393 0.69 0.896342
Target:  5'- -aCGGCGUGaucCGUGUUGUA-CAGCu -3'
miRNA:   3'- gcGUCGCACgaaGCACAACAUcGUCG- -5'
21337 3' -52.1 NC_004778.3 + 117065 0.7 0.87477
Target:  5'- aGCAGCGUGUUUUGcacccagggGUUGaggucgcGCAGCg -3'
miRNA:   3'- gCGUCGCACGAAGCa--------CAACau-----CGUCG- -5'
21337 3' -52.1 NC_004778.3 + 31729 0.7 0.8671
Target:  5'- gCGCGGCGcGCUUUaUGgaGUuuaAGCGGCg -3'
miRNA:   3'- -GCGUCGCaCGAAGcACaaCA---UCGUCG- -5'
21337 3' -52.1 NC_004778.3 + 48696 0.7 0.8671
Target:  5'- uGCGGUuucUGUUaucgugCGUGUUGUAGUAGCc -3'
miRNA:   3'- gCGUCGc--ACGAa-----GCACAACAUCGUCG- -5'
21337 3' -52.1 NC_004778.3 + 24856 0.7 0.842737
Target:  5'- ---cGUGUGCUUCGUGccgugcgggcaUGUGGUAGCg -3'
miRNA:   3'- gcguCGCACGAAGCACa----------ACAUCGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.