miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21341 3' -45 NC_004778.3 + 106432 1.17 0.010862
Target:  5'- aCCAAUUUUUAGAGCUGUCCAACGCGCu -3'
miRNA:   3'- -GGUUAAAAAUCUCGACAGGUUGCGCG- -5'
21341 3' -45 NC_004778.3 + 31226 0.78 0.887199
Target:  5'- gCAGUUag-AGGcguuGCUGUCCGugGCGCg -3'
miRNA:   3'- gGUUAAaaaUCU----CGACAGGUugCGCG- -5'
21341 3' -45 NC_004778.3 + 75018 0.77 0.932603
Target:  5'- gCCAGcugg-AGAGCgUGUCCGAauCGCGCg -3'
miRNA:   3'- -GGUUaaaaaUCUCG-ACAGGUU--GCGCG- -5'
21341 3' -45 NC_004778.3 + 31910 0.76 0.937964
Target:  5'- aCAAcccgUUGGAGCUGg-CGACGCGCc -3'
miRNA:   3'- gGUUaaa-AAUCUCGACagGUUGCGCG- -5'
21341 3' -45 NC_004778.3 + 58653 0.76 0.958252
Target:  5'- aUCAAcucUUGGGGCUGUUCAaauguuauuuuauugGCGCGCa -3'
miRNA:   3'- -GGUUaaaAAUCUCGACAGGU---------------UGCGCG- -5'
21341 3' -45 NC_004778.3 + 86489 0.75 0.96434
Target:  5'- gUCAAUUUUUGGAGUUGUgUcguacuggAGCGCGUu -3'
miRNA:   3'- -GGUUAAAAAUCUCGACAgG--------UUGCGCG- -5'
21341 3' -45 NC_004778.3 + 7981 0.74 0.983764
Target:  5'- gCCGAcaaagaGGAuGCUGUUCAACGCGUc -3'
miRNA:   3'- -GGUUaaaaa-UCU-CGACAGGUUGCGCG- -5'
21341 3' -45 NC_004778.3 + 106505 0.73 0.990447
Target:  5'- uCCAAUUUUUuccAGCgcGUCCAuuauuugucuuuGCGCGCa -3'
miRNA:   3'- -GGUUAAAAAuc-UCGa-CAGGU------------UGCGCG- -5'
21341 3' -45 NC_004778.3 + 10712 0.72 0.99172
Target:  5'- aCCGcuuGUggUUGGAccGCUGUUCGcuGCGCGCu -3'
miRNA:   3'- -GGU---UAaaAAUCU--CGACAGGU--UGCGCG- -5'
21341 3' -45 NC_004778.3 + 19106 0.72 0.995533
Target:  5'- cCCAAUUggcaaAGCUGguUCgGGCGCGCg -3'
miRNA:   3'- -GGUUAAaaaucUCGAC--AGgUUGCGCG- -5'
21341 3' -45 NC_004778.3 + 93554 0.71 0.996217
Target:  5'- aCAGUUUgUUGGAGaUGUCCGAacugcCGUGCa -3'
miRNA:   3'- gGUUAAA-AAUCUCgACAGGUU-----GCGCG- -5'
21341 3' -45 NC_004778.3 + 9595 0.71 0.997232
Target:  5'- gCCGAgacgac-GGCcgUGUCCAACGUGCg -3'
miRNA:   3'- -GGUUaaaaaucUCG--ACAGGUUGCGCG- -5'
21341 3' -45 NC_004778.3 + 70388 0.71 0.997329
Target:  5'- cCCAcUUUUUGacgcccGuGCUGUCCGGCGCu- -3'
miRNA:   3'- -GGUuAAAAAU------CuCGACAGGUUGCGcg -5'
21341 3' -45 NC_004778.3 + 28990 0.7 0.998155
Target:  5'- gCGGUUUUcgcgAGAGCUGauugcgCUAAUGUGCg -3'
miRNA:   3'- gGUUAAAAa---UCUCGACa-----GGUUGCGCG- -5'
21341 3' -45 NC_004778.3 + 34391 0.7 0.998479
Target:  5'- -gAGUUUUUGcagcucguggccGGGCUGcUCCGGCaGCGCg -3'
miRNA:   3'- ggUUAAAAAU------------CUCGAC-AGGUUG-CGCG- -5'
21341 3' -45 NC_004778.3 + 127375 0.7 0.998754
Target:  5'- gCCAAUauaguacGGcAGCUGUgUGACGCGCu -3'
miRNA:   3'- -GGUUAaaaa---UC-UCGACAgGUUGCGCG- -5'
21341 3' -45 NC_004778.3 + 8035 0.7 0.999179
Target:  5'- --------aGGGGCUG-CUAGCGUGCa -3'
miRNA:   3'- gguuaaaaaUCUCGACaGGUUGCGCG- -5'
21341 3' -45 NC_004778.3 + 38278 0.69 0.99934
Target:  5'- uCCAcgUcg-AG-GCUGaucugcgCCAGCGCGCa -3'
miRNA:   3'- -GGUuaAaaaUCuCGACa------GGUUGCGCG- -5'
21341 3' -45 NC_004778.3 + 96297 0.69 0.99934
Target:  5'- gCCAAccugaaAGAGCUGcgaCAGCGCGUu -3'
miRNA:   3'- -GGUUaaaaa-UCUCGACag-GUUGCGCG- -5'
21341 3' -45 NC_004778.3 + 69024 0.69 0.999671
Target:  5'- gCAAUUUaaUUAGAcGCg--CCGugGCGCc -3'
miRNA:   3'- gGUUAAA--AAUCU-CGacaGGUugCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.