Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21341 | 3' | -45 | NC_004778.3 | + | 2624 | 0.66 | 0.999981 |
Target: 5'- gCCAGUUUggUGGAGCgGaUCAGCGUa- -3' miRNA: 3'- -GGUUAAAa-AUCUCGaCaGGUUGCGcg -5' |
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21341 | 3' | -45 | NC_004778.3 | + | 3405 | 0.68 | 0.999911 |
Target: 5'- cCCAuUUUUgaaaaAGAGCguauggUGUCCGugaucacgGCGCGCc -3' miRNA: 3'- -GGUuAAAAa----UCUCG------ACAGGU--------UGCGCG- -5' |
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21341 | 3' | -45 | NC_004778.3 | + | 7981 | 0.74 | 0.983764 |
Target: 5'- gCCGAcaaagaGGAuGCUGUUCAACGCGUc -3' miRNA: 3'- -GGUUaaaaa-UCU-CGACAGGUUGCGCG- -5' |
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21341 | 3' | -45 | NC_004778.3 | + | 8035 | 0.7 | 0.999179 |
Target: 5'- --------aGGGGCUG-CUAGCGUGCa -3' miRNA: 3'- gguuaaaaaUCUCGACaGGUUGCGCG- -5' |
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21341 | 3' | -45 | NC_004778.3 | + | 9595 | 0.71 | 0.997232 |
Target: 5'- gCCGAgacgac-GGCcgUGUCCAACGUGCg -3' miRNA: 3'- -GGUUaaaaaucUCG--ACAGGUUGCGCG- -5' |
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21341 | 3' | -45 | NC_004778.3 | + | 10712 | 0.72 | 0.99172 |
Target: 5'- aCCGcuuGUggUUGGAccGCUGUUCGcuGCGCGCu -3' miRNA: 3'- -GGU---UAaaAAUCU--CGACAGGU--UGCGCG- -5' |
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21341 | 3' | -45 | NC_004778.3 | + | 19106 | 0.72 | 0.995533 |
Target: 5'- cCCAAUUggcaaAGCUGguUCgGGCGCGCg -3' miRNA: 3'- -GGUUAAaaaucUCGAC--AGgUUGCGCG- -5' |
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21341 | 3' | -45 | NC_004778.3 | + | 21675 | 0.68 | 0.99988 |
Target: 5'- gCAGUUUUUuauuuuggugagcAGAcGCUGUCUGGCcguauGCGCg -3' miRNA: 3'- gGUUAAAAA-------------UCU-CGACAGGUUG-----CGCG- -5' |
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21341 | 3' | -45 | NC_004778.3 | + | 25866 | 0.66 | 0.999993 |
Target: 5'- gCGAUaaUUAGGGUgUGUgCCGGCGCGa -3' miRNA: 3'- gGUUAaaAAUCUCG-ACA-GGUUGCGCg -5' |
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21341 | 3' | -45 | NC_004778.3 | + | 27566 | 0.68 | 0.999911 |
Target: 5'- gCCAAcg--UGGAccGCUG-CCuGCGCGCc -3' miRNA: 3'- -GGUUaaaaAUCU--CGACaGGuUGCGCG- -5' |
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21341 | 3' | -45 | NC_004778.3 | + | 28990 | 0.7 | 0.998155 |
Target: 5'- gCGGUUUUcgcgAGAGCUGauugcgCUAAUGUGCg -3' miRNA: 3'- gGUUAAAAa---UCUCGACa-----GGUUGCGCG- -5' |
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21341 | 3' | -45 | NC_004778.3 | + | 31226 | 0.78 | 0.887199 |
Target: 5'- gCAGUUag-AGGcguuGCUGUCCGugGCGCg -3' miRNA: 3'- gGUUAAaaaUCU----CGACAGGUugCGCG- -5' |
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21341 | 3' | -45 | NC_004778.3 | + | 31435 | 0.67 | 0.99995 |
Target: 5'- uCCAAg--UcGGAGCaGUC--GCGCGCg -3' miRNA: 3'- -GGUUaaaAaUCUCGaCAGguUGCGCG- -5' |
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21341 | 3' | -45 | NC_004778.3 | + | 31910 | 0.76 | 0.937964 |
Target: 5'- aCAAcccgUUGGAGCUGg-CGACGCGCc -3' miRNA: 3'- gGUUaaa-AAUCUCGACagGUUGCGCG- -5' |
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21341 | 3' | -45 | NC_004778.3 | + | 34391 | 0.7 | 0.998479 |
Target: 5'- -gAGUUUUUGcagcucguggccGGGCUGcUCCGGCaGCGCg -3' miRNA: 3'- ggUUAAAAAU------------CUCGAC-AGGUUG-CGCG- -5' |
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21341 | 3' | -45 | NC_004778.3 | + | 38278 | 0.69 | 0.99934 |
Target: 5'- uCCAcgUcg-AG-GCUGaucugcgCCAGCGCGCa -3' miRNA: 3'- -GGUuaAaaaUCuCGACa------GGUUGCGCG- -5' |
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21341 | 3' | -45 | NC_004778.3 | + | 38312 | 0.66 | 0.999986 |
Target: 5'- gCGGguagcgUGGAGgUGUCgAGCgGCGCa -3' miRNA: 3'- gGUUaaaa--AUCUCgACAGgUUG-CGCG- -5' |
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21341 | 3' | -45 | NC_004778.3 | + | 43839 | 0.68 | 0.999801 |
Target: 5'- gCUAAUUgcgc-GGCcGUCCGACGCGg -3' miRNA: 3'- -GGUUAAaaaucUCGaCAGGUUGCGCg -5' |
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21341 | 3' | -45 | NC_004778.3 | + | 43976 | 0.67 | 0.999933 |
Target: 5'- -gGAUUacUUUGGcGCgccGcCCAACGCGCg -3' miRNA: 3'- ggUUAA--AAAUCuCGa--CaGGUUGCGCG- -5' |
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21341 | 3' | -45 | NC_004778.3 | + | 46725 | 0.68 | 0.99979 |
Target: 5'- aCCGGUUgaacgacagcgUGGAGgUGUaCGGCGUGCa -3' miRNA: 3'- -GGUUAAaa---------AUCUCgACAgGUUGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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