Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21341 | 3' | -45 | NC_004778.3 | + | 43976 | 0.67 | 0.999933 |
Target: 5'- -gGAUUacUUUGGcGCgccGcCCAACGCGCg -3' miRNA: 3'- ggUUAA--AAAUCuCGa--CaGGUUGCGCG- -5' |
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21341 | 3' | -45 | NC_004778.3 | + | 88201 | 0.68 | 0.999801 |
Target: 5'- uUCGAUaa-UGGGGUUG-CCGGCGCGg -3' miRNA: 3'- -GGUUAaaaAUCUCGACaGGUUGCGCg -5' |
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21341 | 3' | -45 | NC_004778.3 | + | 43839 | 0.68 | 0.999801 |
Target: 5'- gCUAAUUgcgc-GGCcGUCCGACGCGg -3' miRNA: 3'- -GGUUAAaaaucUCGaCAGGUUGCGCg -5' |
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21341 | 3' | -45 | NC_004778.3 | + | 100610 | 0.68 | 0.999847 |
Target: 5'- gCAGUUgu---AGCUgGUCCAgcaucGCGCGCa -3' miRNA: 3'- gGUUAAaaaucUCGA-CAGGU-----UGCGCG- -5' |
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21341 | 3' | -45 | NC_004778.3 | + | 21675 | 0.68 | 0.99988 |
Target: 5'- gCAGUUUUUuauuuuggugagcAGAcGCUGUCUGGCcguauGCGCg -3' miRNA: 3'- gGUUAAAAA-------------UCU-CGACAGGUUG-----CGCG- -5' |
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21341 | 3' | -45 | NC_004778.3 | + | 125735 | 0.68 | 0.999911 |
Target: 5'- gCCGcgcgUUGGuacGGCUGUCCAuUGUGCc -3' miRNA: 3'- -GGUuaaaAAUC---UCGACAGGUuGCGCG- -5' |
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21341 | 3' | -45 | NC_004778.3 | + | 27566 | 0.68 | 0.999911 |
Target: 5'- gCCAAcg--UGGAccGCUG-CCuGCGCGCc -3' miRNA: 3'- -GGUUaaaaAUCU--CGACaGGuUGCGCG- -5' |
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21341 | 3' | -45 | NC_004778.3 | + | 49377 | 0.68 | 0.999911 |
Target: 5'- gUCGAgguagUUGGGGCcGgCCAGCGcCGCg -3' miRNA: 3'- -GGUUaaa--AAUCUCGaCaGGUUGC-GCG- -5' |
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21341 | 3' | -45 | NC_004778.3 | + | 61623 | 0.67 | 0.999933 |
Target: 5'- gCAAgcgUUUGGcGCcGcgcagCCAGCGCGCg -3' miRNA: 3'- gGUUaa-AAAUCuCGaCa----GGUUGCGCG- -5' |
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21341 | 3' | -45 | NC_004778.3 | + | 68656 | 0.68 | 0.999743 |
Target: 5'- cCCAA-----AGuGCguUCCAACGCGCg -3' miRNA: 3'- -GGUUaaaaaUCuCGacAGGUUGCGCG- -5' |
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21341 | 3' | -45 | NC_004778.3 | + | 96297 | 0.69 | 0.99934 |
Target: 5'- gCCAAccugaaAGAGCUGcgaCAGCGCGUu -3' miRNA: 3'- -GGUUaaaaa-UCUCGACag-GUUGCGCG- -5' |
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21341 | 3' | -45 | NC_004778.3 | + | 38278 | 0.69 | 0.99934 |
Target: 5'- uCCAcgUcg-AG-GCUGaucugcgCCAGCGCGCa -3' miRNA: 3'- -GGUuaAaaaUCuCGACa------GGUUGCGCG- -5' |
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21341 | 3' | -45 | NC_004778.3 | + | 31226 | 0.78 | 0.887199 |
Target: 5'- gCAGUUag-AGGcguuGCUGUCCGugGCGCg -3' miRNA: 3'- gGUUAAaaaUCU----CGACAGGUugCGCG- -5' |
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21341 | 3' | -45 | NC_004778.3 | + | 75018 | 0.77 | 0.932603 |
Target: 5'- gCCAGcugg-AGAGCgUGUCCGAauCGCGCg -3' miRNA: 3'- -GGUUaaaaaUCUCG-ACAGGUU--GCGCG- -5' |
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21341 | 3' | -45 | NC_004778.3 | + | 58653 | 0.76 | 0.958252 |
Target: 5'- aUCAAcucUUGGGGCUGUUCAaauguuauuuuauugGCGCGCa -3' miRNA: 3'- -GGUUaaaAAUCUCGACAGGU---------------UGCGCG- -5' |
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21341 | 3' | -45 | NC_004778.3 | + | 10712 | 0.72 | 0.99172 |
Target: 5'- aCCGcuuGUggUUGGAccGCUGUUCGcuGCGCGCu -3' miRNA: 3'- -GGU---UAaaAAUCU--CGACAGGU--UGCGCG- -5' |
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21341 | 3' | -45 | NC_004778.3 | + | 19106 | 0.72 | 0.995533 |
Target: 5'- cCCAAUUggcaaAGCUGguUCgGGCGCGCg -3' miRNA: 3'- -GGUUAAaaaucUCGAC--AGgUUGCGCG- -5' |
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21341 | 3' | -45 | NC_004778.3 | + | 93554 | 0.71 | 0.996217 |
Target: 5'- aCAGUUUgUUGGAGaUGUCCGAacugcCGUGCa -3' miRNA: 3'- gGUUAAA-AAUCUCgACAGGUU-----GCGCG- -5' |
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21341 | 3' | -45 | NC_004778.3 | + | 34391 | 0.7 | 0.998479 |
Target: 5'- -gAGUUUUUGcagcucguggccGGGCUGcUCCGGCaGCGCg -3' miRNA: 3'- ggUUAAAAAU------------CUCGAC-AGGUUG-CGCG- -5' |
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21341 | 3' | -45 | NC_004778.3 | + | 8035 | 0.7 | 0.999179 |
Target: 5'- --------aGGGGCUG-CUAGCGUGCa -3' miRNA: 3'- gguuaaaaaUCUCGACaGGUUGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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