miRNA display CGI


Results 21 - 40 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21341 5' -49.2 NC_004778.3 + 61647 0.74 0.821796
Target:  5'- aGCGCGCGCcAAcgccGCGCGCAuGCUGg--- -3'
miRNA:   3'- -CGCGCGCGuUU----UGCGCGU-UGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 88962 0.74 0.830714
Target:  5'- aGCGCGUGC---GCGCGCAugucuacaaGCUuuUUGGg -3'
miRNA:   3'- -CGCGCGCGuuuUGCGCGU---------UGAu-AACC- -5'
21341 5' -49.2 NC_004778.3 + 60500 0.74 0.838569
Target:  5'- -gGCGCGCGAAaucuacGCGCGCAACccuaccgUGUUGc -3'
miRNA:   3'- cgCGCGCGUUU------UGCGCGUUG-------AUAACc -5'
21341 5' -49.2 NC_004778.3 + 38357 0.74 0.839431
Target:  5'- cGCGCGCGCu-AGCGCGCAu------- -3'
miRNA:   3'- -CGCGCGCGuuUUGCGCGUugauaacc -5'
21341 5' -49.2 NC_004778.3 + 23750 0.74 0.839431
Target:  5'- aGCGCGUGCGccGAUGCuuGCAGCUAaagUGGc -3'
miRNA:   3'- -CGCGCGCGUu-UUGCG--CGUUGAUa--ACC- -5'
21341 5' -49.2 NC_004778.3 + 17036 0.74 0.839431
Target:  5'- aGUGCagauGUGCAAAAUGCGCAACUcggcGGg -3'
miRNA:   3'- -CGCG----CGCGUUUUGCGCGUUGAuaa-CC- -5'
21341 5' -49.2 NC_004778.3 + 111747 0.74 0.847098
Target:  5'- gGCGCGCGUAAcaccGCGCGCcguccguGACU-UUGGc -3'
miRNA:   3'- -CGCGCGCGUUu---UGCGCG-------UUGAuAACC- -5'
21341 5' -49.2 NC_004778.3 + 29339 0.74 0.847939
Target:  5'- gGCGCGCGCugggguGCGCcaaGCGGCUGUa-- -3'
miRNA:   3'- -CGCGCGCGuuu---UGCG---CGUUGAUAacc -5'
21341 5' -49.2 NC_004778.3 + 29477 0.74 0.856229
Target:  5'- aGCGCGCGC----CGCGCcaccuucgaaGAUUAUUGGc -3'
miRNA:   3'- -CGCGCGCGuuuuGCGCG----------UUGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 38504 0.73 0.864294
Target:  5'- aUGCGCGCuagcGCGCGCGACgaccGGu -3'
miRNA:   3'- cGCGCGCGuuu-UGCGCGUUGauaaCC- -5'
21341 5' -49.2 NC_004778.3 + 34179 0.73 0.864294
Target:  5'- uGCGCaGCauGCAGGACGUGCugugGCUGUUGu -3'
miRNA:   3'- -CGCG-CG--CGUUUUGCGCGu---UGAUAACc -5'
21341 5' -49.2 NC_004778.3 + 82415 0.73 0.864294
Target:  5'- aGCGUGCGCAAcguuUGCaGCAGCgaAUUGGu -3'
miRNA:   3'- -CGCGCGCGUUuu--GCG-CGUUGa-UAACC- -5'
21341 5' -49.2 NC_004778.3 + 10405 0.73 0.864294
Target:  5'- cCGCGCGCAAucGGCGCGCugcgcACUAa--- -3'
miRNA:   3'- cGCGCGCGUU--UUGCGCGu----UGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 95406 0.73 0.884889
Target:  5'- aGCGCGuCGCAGcuuagcGACGCGCGcuacGCUGUcaugcuguacccguUGGu -3'
miRNA:   3'- -CGCGC-GCGUU------UUGCGCGU----UGAUA--------------ACC- -5'
21341 5' -49.2 NC_004778.3 + 48134 0.73 0.887068
Target:  5'- uGCGCGCGU---GCGCGCGuACUGg--- -3'
miRNA:   3'- -CGCGCGCGuuuUGCGCGU-UGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 91184 0.73 0.894166
Target:  5'- gGCGCuCGCGuucACGCGCAcggaUAUUGGa -3'
miRNA:   3'- -CGCGcGCGUuu-UGCGCGUug--AUAACC- -5'
21341 5' -49.2 NC_004778.3 + 54217 0.73 0.894166
Target:  5'- uUGCGuCGCuuguauguCGCGCAACUGUUGu -3'
miRNA:   3'- cGCGC-GCGuuuu----GCGCGUUGAUAACc -5'
21341 5' -49.2 NC_004778.3 + 61784 0.72 0.901009
Target:  5'- gGCGCGCGCu-GGCuGCGCGGCg----- -3'
miRNA:   3'- -CGCGCGCGuuUUG-CGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 69699 0.72 0.901009
Target:  5'- aGCGUGUGCAAGACcaaccuGCGCGACg----- -3'
miRNA:   3'- -CGCGCGCGUUUUG------CGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 6946 0.72 0.901009
Target:  5'- uGUGCGCGCuaauAAACuuGUcGCUGUUGGc -3'
miRNA:   3'- -CGCGCGCGu---UUUGcgCGuUGAUAACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.