Results 1 - 20 of 223 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 317 | 0.76 | 0.774526 |
Target: 5'- aGCGCGUGCu-GGCGCaagaauuuguaGCAGCgGUUGGg -3' miRNA: 3'- -CGCGCGCGuuUUGCG-----------CGUUGaUAACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 1642 | 0.69 | 0.982364 |
Target: 5'- uGCGCuGCGgAAAGCGaCGCGuc-GUUGGc -3' miRNA: 3'- -CGCG-CGCgUUUUGC-GCGUugaUAACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 2137 | 0.66 | 0.996209 |
Target: 5'- uGCGC-CGCA--GCGUGCAcgaGCUGUg-- -3' miRNA: 3'- -CGCGcGCGUuuUGCGCGU---UGAUAacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 2548 | 0.68 | 0.983976 |
Target: 5'- uGCGgGCgGCGAccuuuaguuguCGCGCAAUUGUUGa -3' miRNA: 3'- -CGCgCG-CGUUuu---------GCGCGUUGAUAACc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 2595 | 0.66 | 0.996451 |
Target: 5'- gGCGUGcCGCAcucgggccacagguAACGCGCAAUaaagUGGu -3' miRNA: 3'- -CGCGC-GCGUu-------------UUGCGCGUUGaua-ACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 2827 | 0.68 | 0.986182 |
Target: 5'- --aCGCGCAGGACGCGCcACa----- -3' miRNA: 3'- cgcGCGCGUUUUGCGCGuUGauaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 4607 | 0.66 | 0.996209 |
Target: 5'- cGCGUGC-CAGGcCGCGCGAUUcc-GGa -3' miRNA: 3'- -CGCGCGcGUUUuGCGCGUUGAuaaCC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 5101 | 0.71 | 0.931301 |
Target: 5'- cUGUGCGC-GAACGUGCAGCUcgcgcUGGc -3' miRNA: 3'- cGCGCGCGuUUUGCGCGUUGAua---ACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 6392 | 0.67 | 0.994792 |
Target: 5'- cCGCGCuGCAAAAgGCcgaauccaaGCAGCUGUUu- -3' miRNA: 3'- cGCGCG-CGUUUUgCG---------CGUUGAUAAcc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 6738 | 0.69 | 0.982364 |
Target: 5'- cCGCGCGCAAA-CGCGauuuGCgUGUUGc -3' miRNA: 3'- cGCGCGCGUUUuGCGCgu--UG-AUAACc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 6946 | 0.72 | 0.901009 |
Target: 5'- uGUGCGCGCuaauAAACuuGUcGCUGUUGGc -3' miRNA: 3'- -CGCGCGCGu---UUUGcgCGuUGAUAACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 8116 | 0.66 | 0.998106 |
Target: 5'- aGCGaCGUGC---ACGUGCuACcAUUGGa -3' miRNA: 3'- -CGC-GCGCGuuuUGCGCGuUGaUAACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 8488 | 0.66 | 0.996209 |
Target: 5'- gGCGCGUuccGCAa---GCGCGGCg--UGGu -3' miRNA: 3'- -CGCGCG---CGUuuugCGCGUUGauaACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 8635 | 0.71 | 0.940092 |
Target: 5'- cGCGCuuGCGGAACGCGCcugaaccggccauuAGCUucUGGu -3' miRNA: 3'- -CGCGcgCGUUUUGCGCG--------------UUGAuaACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 8815 | 0.72 | 0.913918 |
Target: 5'- gGCGCGCucaGCGAAugGCGCcuACUAa--- -3' miRNA: 3'- -CGCGCG---CGUUUugCGCGu-UGAUaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 9407 | 0.69 | 0.977802 |
Target: 5'- cGCGCGCaaacuGCAGcaguuuggcguGGCGCGCAc--GUUGGa -3' miRNA: 3'- -CGCGCG-----CGUU-----------UUGCGCGUugaUAACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 9519 | 0.71 | 0.950777 |
Target: 5'- cGCGCGCGUAucgacgauuuGCGCGCcgUU-UUGGa -3' miRNA: 3'- -CGCGCGCGUuu--------UGCGCGuuGAuAACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 9570 | 0.66 | 0.997606 |
Target: 5'- uGCGCGCcacgccaaacugcuGCAGuuuGCGCGCGuggugaaAUUGGu -3' miRNA: 3'- -CGCGCG--------------CGUUu--UGCGCGUuga----UAACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 9674 | 0.66 | 0.996789 |
Target: 5'- -gGCGCGCAAAucgucgauacGCGCGCggUa----- -3' miRNA: 3'- cgCGCGCGUUU----------UGCGCGuuGauaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 10050 | 0.66 | 0.996209 |
Target: 5'- aGCGCGUGCGcAACaUGCAAaaGUUGa -3' miRNA: 3'- -CGCGCGCGUuUUGcGCGUUgaUAACc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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