miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21346 3' -57.3 NC_004778.3 + 59998 0.66 0.8513
Target:  5'- ---cGGAGUCgGCCGCGGaCGaCcUGCCc -3'
miRNA:   3'- gcaaCCUUAGaCGGUGCC-GC-GcGCGG- -5'
21346 3' -57.3 NC_004778.3 + 87713 0.69 0.645094
Target:  5'- uCGUUGuAAUgCUGUagCAUGGCGCGCGgCg -3'
miRNA:   3'- -GCAACcUUA-GACG--GUGCCGCGCGCgG- -5'
21346 3' -57.3 NC_004778.3 + 47566 0.69 0.645094
Target:  5'- uGUUGGggUggcgCgugGuCCACGcGCGCGCGUg -3'
miRNA:   3'- gCAACCuuA----Ga--C-GGUGC-CGCGCGCGg -5'
21346 3' -57.3 NC_004778.3 + 4734 0.79 0.217449
Target:  5'- cCGUUGGAcaguggccaGUCUGCUaacGCGGCacaGCGCGCUg -3'
miRNA:   3'- -GCAACCU---------UAGACGG---UGCCG---CGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 73431 0.66 0.834384
Target:  5'- uCGUUGGAA---GCgCugGGCGCGUugggcgaucgcacGCCc -3'
miRNA:   3'- -GCAACCUUagaCG-GugCCGCGCG-------------CGG- -5'
21346 3' -57.3 NC_004778.3 + 85444 0.66 0.819242
Target:  5'- aCGcgGGcGUUUGCgGCGGCGacggcauggacgcggGCGCCg -3'
miRNA:   3'- -GCaaCCuUAGACGgUGCCGCg--------------CGCGG- -5'
21346 3' -57.3 NC_004778.3 + 18549 0.67 0.809716
Target:  5'- aCGUUGGG---UGCCACGGaGUucCGCCg -3'
miRNA:   3'- -GCAACCUuagACGGUGCCgCGc-GCGG- -5'
21346 3' -57.3 NC_004778.3 + 93166 0.67 0.800889
Target:  5'- gCGUUGGGG-CUGCUGCGcguucaCGCG-GCCg -3'
miRNA:   3'- -GCAACCUUaGACGGUGCc-----GCGCgCGG- -5'
21346 3' -57.3 NC_004778.3 + 32820 0.68 0.754652
Target:  5'- --------gCUGCCGCGGCGCGUGgUg -3'
miRNA:   3'- gcaaccuuaGACGGUGCCGCGCGCgG- -5'
21346 3' -57.3 NC_004778.3 + 83270 0.69 0.675575
Target:  5'- aCGUUGGGuaaccaGUCgaUCGCGGCGCGCaaGCUg -3'
miRNA:   3'- -GCAACCU------UAGacGGUGCCGCGCG--CGG- -5'
21346 3' -57.3 NC_004778.3 + 37789 0.68 0.735344
Target:  5'- --gUGGugccgGUCACGGCGC-CGCCg -3'
miRNA:   3'- gcaACCuuagaCGGUGCCGCGcGCGG- -5'
21346 3' -57.3 NC_004778.3 + 57927 0.67 0.76415
Target:  5'- uGUcGGAAUacguguggcgcUUGgCGCGGCGgGCGUCg -3'
miRNA:   3'- gCAaCCUUA-----------GACgGUGCCGCgCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 31905 0.66 0.843349
Target:  5'- cCGUUGGA----GCU--GGCGaCGCGCCg -3'
miRNA:   3'- -GCAACCUuagaCGGugCCGC-GCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 15451 0.68 0.725552
Target:  5'- --aUGGGAUCUGCCGaguuuaGCGCGUaGCUc -3'
miRNA:   3'- gcaACCUUAGACGGUgc----CGCGCG-CGG- -5'
21346 3' -57.3 NC_004778.3 + 36506 0.66 0.843349
Target:  5'- aCGUUGGAGUgCagcgUGCCGuuGCGCGacaugaCGCCc -3'
miRNA:   3'- -GCAACCUUA-G----ACGGUgcCGCGC------GCGG- -5'
21346 3' -57.3 NC_004778.3 + 43893 0.67 0.76415
Target:  5'- gCGgUGGAcacaugAUgUGUCcCGGCGCgGCGCCc -3'
miRNA:   3'- -GCaACCU------UAgACGGuGCCGCG-CGCGG- -5'
21346 3' -57.3 NC_004778.3 + 70137 0.68 0.705738
Target:  5'- aGUUGcagguUUUGCgGCgGGCGCGCGCa -3'
miRNA:   3'- gCAACcuu--AGACGgUG-CCGCGCGCGg -5'
21346 3' -57.3 NC_004778.3 + 115093 0.69 0.645094
Target:  5'- --aUGGcaaagGCCGCGGUGCGCacGCCg -3'
miRNA:   3'- gcaACCuuagaCGGUGCCGCGCG--CGG- -5'
21346 3' -57.3 NC_004778.3 + 59755 0.66 0.835208
Target:  5'- ---cGGuuuUCgGCCAagUGGCGCGCGUa -3'
miRNA:   3'- gcaaCCuu-AGaCGGU--GCCGCGCGCGg -5'
21346 3' -57.3 NC_004778.3 + 108891 0.67 0.809716
Target:  5'- aCGUaGGAAgguggUGCCGCGaCGCaGCGCUg -3'
miRNA:   3'- -GCAaCCUUag---ACGGUGCcGCG-CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.