miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21353 3' -53.3 NC_004778.3 + 123432 0.72 0.711904
Target:  5'- -gUCGACGUCGAGgAugaGCUGGCGCc -3'
miRNA:   3'- ugGGUUGCGGCUUgUuuaCGACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 35820 0.72 0.711904
Target:  5'- gACCCGGCGCCGcaccAACAAGcGCcuugGGgGCc -3'
miRNA:   3'- -UGGGUUGCGGC----UUGUUUaCGa---CCgCG- -5'
21353 3' -53.3 NC_004778.3 + 111811 0.72 0.722175
Target:  5'- gGCC--GCGCCGGuaACAAggGCgagGGCGCc -3'
miRNA:   3'- -UGGguUGCGGCU--UGUUuaCGa--CCGCG- -5'
21353 3' -53.3 NC_004778.3 + 64576 0.72 0.722175
Target:  5'- uGCCgCAACGgUGAGCA--UGUugUGGCGCa -3'
miRNA:   3'- -UGG-GUUGCgGCUUGUuuACG--ACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 103783 0.72 0.722175
Target:  5'- cGCCgCAACGCaaGAACGGuUGCacgugUGGCGCg -3'
miRNA:   3'- -UGG-GUUGCGg-CUUGUUuACG-----ACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 36708 0.71 0.732365
Target:  5'- uAUUCGcgcGCGCCGGuucCAAAUGC-GGCGCg -3'
miRNA:   3'- -UGGGU---UGCGGCUu--GUUUACGaCCGCG- -5'
21353 3' -53.3 NC_004778.3 + 12044 0.71 0.742461
Target:  5'- cGCUugCAACGCCGGuuGCAAgcGUGCgugcaaGGCGCu -3'
miRNA:   3'- -UGG--GUUGCGGCU--UGUU--UACGa-----CCGCG- -5'
21353 3' -53.3 NC_004778.3 + 113887 0.71 0.742461
Target:  5'- gGCCgGgcGCGUCGGGCGAagGC-GGCGCc -3'
miRNA:   3'- -UGGgU--UGCGGCUUGUUuaCGaCCGCG- -5'
21353 3' -53.3 NC_004778.3 + 31468 0.71 0.77015
Target:  5'- cGCCCAAuaccacCGCCGAuuauuugGCUGaGCGCa -3'
miRNA:   3'- -UGGGUU------GCGGCUuguuua-CGAC-CGCG- -5'
21353 3' -53.3 NC_004778.3 + 17086 0.71 0.772091
Target:  5'- aACCCGACaagGCCGuguuGCu-GUGCgcgcGGCGCg -3'
miRNA:   3'- -UGGGUUG---CGGCu---UGuuUACGa---CCGCG- -5'
21353 3' -53.3 NC_004778.3 + 125045 0.71 0.772091
Target:  5'- cACCU-ACuCUGAACAugcgGCUGGCGCu -3'
miRNA:   3'- -UGGGuUGcGGCUUGUuua-CGACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 50561 0.7 0.781714
Target:  5'- uUCCGAacCGCCauuGAACAAGUGCU-GCGCc -3'
miRNA:   3'- uGGGUU--GCGG---CUUGUUUACGAcCGCG- -5'
21353 3' -53.3 NC_004778.3 + 49289 0.7 0.781714
Target:  5'- cGCUCuuguCGCCGAACAGc-GC-GGCGCg -3'
miRNA:   3'- -UGGGuu--GCGGCUUGUUuaCGaCCGCG- -5'
21353 3' -53.3 NC_004778.3 + 15838 0.7 0.791194
Target:  5'- cGCgCCAuCGUCGAGCAGuUGUUGGuCGUg -3'
miRNA:   3'- -UG-GGUuGCGGCUUGUUuACGACC-GCG- -5'
21353 3' -53.3 NC_004778.3 + 43854 0.7 0.791194
Target:  5'- gUCCGACGCgGcAACAGGUGCcGGCu- -3'
miRNA:   3'- uGGGUUGCGgC-UUGUUUACGaCCGcg -5'
21353 3' -53.3 NC_004778.3 + 33740 0.7 0.791194
Target:  5'- aGCCC-GCGaa-AGCGGAuUGCUGGCGCg -3'
miRNA:   3'- -UGGGuUGCggcUUGUUU-ACGACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 86272 0.7 0.800521
Target:  5'- aACUCGGCGCgcaugCGGACAAAguuuUUGGCGCa -3'
miRNA:   3'- -UGGGUUGCG-----GCUUGUUUac--GACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 125706 0.7 0.809685
Target:  5'- uACCgCAACGCCGAaguGCAcgccgaAAUGCc-GCGCg -3'
miRNA:   3'- -UGG-GUUGCGGCU---UGU------UUACGacCGCG- -5'
21353 3' -53.3 NC_004778.3 + 32281 0.7 0.809685
Target:  5'- gGCCggCGGCGCCGuguCGg--GCUGGUGCu -3'
miRNA:   3'- -UGG--GUUGCGGCuu-GUuuaCGACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 108417 0.7 0.818677
Target:  5'- uGCCgCGGCGCagguGGACGc--GCUGGUGCg -3'
miRNA:   3'- -UGG-GUUGCGg---CUUGUuuaCGACCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.