miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21373 3' -59 NC_004812.1 + 123980 1.09 0.001558
Target:  5'- cGGACUUCCCCGAUGGGAGGCCCCAUAa -3'
miRNA:   3'- -CCUGAAGGGGCUACCCUCCGGGGUAU- -5'
21373 3' -59 NC_004812.1 + 123889 0.69 0.613305
Target:  5'- --cCUcCCCCGAcGGGGcGGCCCCGa- -3'
miRNA:   3'- ccuGAaGGGGCUaCCCU-CCGGGGUau -5'
21373 3' -59 NC_004812.1 + 123839 0.66 0.788331
Target:  5'- cGGGCg--CCCGGgccaauGGAGGCCCCcgGc -3'
miRNA:   3'- -CCUGaagGGGCUac----CCUCCGGGGuaU- -5'
21373 3' -59 NC_004812.1 + 120267 0.71 0.483633
Target:  5'- cGGGCgcgaguccucuuccgCCCCucUGGGGGGCCCCcgGc -3'
miRNA:   3'- -CCUGaa-------------GGGGcuACCCUCCGGGGuaU- -5'
21373 3' -59 NC_004812.1 + 120150 0.71 0.483633
Target:  5'- cGGGCgcgaguccuccuccgCCCCucUGGGGGGCCCCcgGc -3'
miRNA:   3'- -CCUGaa-------------GGGGcuACCCUCCGGGGuaU- -5'
21373 3' -59 NC_004812.1 + 117531 0.76 0.248723
Target:  5'- cGGACcccggCCCgGAcccaUGGGGGGCCCCAg- -3'
miRNA:   3'- -CCUGaa---GGGgCU----ACCCUCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 113338 0.72 0.42334
Target:  5'- uGGGCUccggugcuggguUCCUCGGUGGGGGGCuacaaCCCGg- -3'
miRNA:   3'- -CCUGA------------AGGGGCUACCCUCCG-----GGGUau -5'
21373 3' -59 NC_004812.1 + 112544 0.66 0.770134
Target:  5'- cGGGCgcCCgCCGAgcgGGGGGGCgCgCCGUc -3'
miRNA:   3'- -CCUGaaGG-GGCUa--CCCUCCG-G-GGUAu -5'
21373 3' -59 NC_004812.1 + 110064 0.7 0.563489
Target:  5'- gGGGCUcgggCCCGAcgGGGAguacggagaGGCCCCGUGg -3'
miRNA:   3'- -CCUGAag--GGGCUa-CCCU---------CCGGGGUAU- -5'
21373 3' -59 NC_004812.1 + 106815 0.7 0.543841
Target:  5'- cGACUgggCCCCGc-GGGAGGgCCCGc- -3'
miRNA:   3'- cCUGAa--GGGGCuaCCCUCCgGGGUau -5'
21373 3' -59 NC_004812.1 + 105035 0.74 0.357597
Target:  5'- cGGCcUCCgCGAUGGGAGGCgCCGc- -3'
miRNA:   3'- cCUGaAGGgGCUACCCUCCGgGGUau -5'
21373 3' -59 NC_004812.1 + 101896 0.66 0.758985
Target:  5'- cGGGCUagggcgCCCCGAggcgcggcggucGGGccucgGGGCCCCGg- -3'
miRNA:   3'- -CCUGAa-----GGGGCUa-----------CCC-----UCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 95028 0.69 0.593291
Target:  5'- gGGGCUccaccgccggaUCCgCGA-GGGGGGUCCCGg- -3'
miRNA:   3'- -CCUGA-----------AGGgGCUaCCCUCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 94554 0.67 0.741974
Target:  5'- cGGCggCCCUGGUGGcGGGGCUCgGg- -3'
miRNA:   3'- cCUGaaGGGGCUACC-CUCCGGGgUau -5'
21373 3' -59 NC_004812.1 + 87382 0.66 0.760854
Target:  5'- uGAUcgCCCCccc-GGGGGCCCCGUGg -3'
miRNA:   3'- cCUGaaGGGGcuacCCUCCGGGGUAU- -5'
21373 3' -59 NC_004812.1 + 80426 0.67 0.712982
Target:  5'- gGGACccgUCCCCGAgcGGccGGGCCCUg-- -3'
miRNA:   3'- -CCUGa--AGGGGCUacCC--UCCGGGGuau -5'
21373 3' -59 NC_004812.1 + 79743 0.67 0.751464
Target:  5'- cGGACaUCCCCGggGGGuGGacgugccugCCCGa- -3'
miRNA:   3'- -CCUGaAGGGGCuaCCCuCCg--------GGGUau -5'
21373 3' -59 NC_004812.1 + 78846 0.68 0.683394
Target:  5'- cGGugUcCCCCGAggagcccgGGGAGGgcggaggccgcCCCCAc- -3'
miRNA:   3'- -CCugAaGGGGCUa-------CCCUCC-----------GGGGUau -5'
21373 3' -59 NC_004812.1 + 76197 0.67 0.707105
Target:  5'- gGGACgggUCCCCGgcGGaGcccucggcgugcagcAGGCCCCcgAa -3'
miRNA:   3'- -CCUGa--AGGGGCuaCC-C---------------UCCGGGGuaU- -5'
21373 3' -59 NC_004812.1 + 75160 0.67 0.751464
Target:  5'- gGGAggcCCCCGAucgccUGGGgcccuGGGCCCCGg- -3'
miRNA:   3'- -CCUgaaGGGGCU-----ACCC-----UCCGGGGUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.